Locus 3657

Sequence ID 2R_DroMel_CAF1
Location 12,135,197 – 12,135,293
Length 96
Max. P 0.839105
window5952

overview

Window 2

Location 12,135,197 – 12,135,293
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 69.48
Mean single sequence MFE -17.61
Consensus MFE -4.53
Energy contribution -5.86
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -2.33
Structure conservation index 0.26
SVM decision value 0.74
SVM RNA-class probability 0.839105
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12135197 96 - 20766785
ACGCAAACAGCUAAUACAAAAAGUGCAUCUAAAAUUCAGGGUGGCUAACCAUCGAAACCACCCACCCAGCACUCCAUUCCACUUCACUCGAUUCCA
..((.....))..........(((((((.....))...((((((.............)))))).....)))))....................... ( -13.82)
>DroPse_CAF1 23868 79 - 1
CCAUAAGUAGCCCGGGGCCAAAGUGCAUCUAAAAUUCAGGCUGACUGU--AGCGCACCCUCCAUUCCGACGCCUC---------------GGGCCU
.........(((((((((....((((..((.......))((((....)--)))))))..((......)).)))))---------------)))).. ( -25.10)
>DroSec_CAF1 22354 81 - 1
ACGCAAACAGCUAAUAAAAAAAGUGCAUCUAAAAUUCAGGGUGGCUAACCAUCGAAACCACCCACCCAGCACU---------------CCAUUCCA
..((.....))..........(((((((.....))...((((((.............)))))).....)))))---------------........ ( -13.82)
>DroSim_CAF1 5810 86 - 1
ACGCAAACAGCUAAUAAAAAAAGUGCAUCUAAAAUUCAGGGUGGCUAACCAUCGAAACCACCCACCCAGCACUCCACU----------CCAUUCCA
..((.....))..........(((((((.....))...((((((.............)))))).....))))).....----------........ ( -13.82)
>DroYak_CAF1 22708 84 - 1
ACGCAAACAGCUAAUACA--AAGUGAAUCUAAAAUUCAGGGUGGCUAACCAUCGAAACCACCCACCCAACACUUCACU----------CCAUUCCU
..((.....)).......--.((((((...........((((((.............)))))).........))))))----------........ ( -13.97)
>DroPer_CAF1 22208 79 - 1
CCAUAAGUAGCCCGGGGCCAAAGUGCAUCUAAAAUUCAGGCUGACUGU--AGCGCACCCUCCAUUCCGACGCCUC---------------GGGCCU
.........(((((((((....((((..((.......))((((....)--)))))))..((......)).)))))---------------)))).. ( -25.10)
>consensus
ACGCAAACAGCUAAUAAAAAAAGUGCAUCUAAAAUUCAGGGUGGCUAACCAUCGAAACCACCCACCCAACACUUC_____________CCAUUCCA
......................................((((((.................))))))............................. ( -4.53 =  -5.86 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:04 2006