Locus 3651

Sequence ID 2R_DroMel_CAF1
Location 12,108,540 – 12,108,640
Length 100
Max. P 0.511495
window5946

overview

Window 6

Location 12,108,540 – 12,108,640
Length 100
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 71.13
Mean single sequence MFE -12.20
Consensus MFE -1.08
Energy contribution -1.64
Covariance contribution 0.56
Combinations/Pair 1.25
Mean z-score -1.53
Structure conservation index 0.09
SVM decision value -0.04
SVM RNA-class probability 0.511495
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12108540 100 - 20766785
UUAACUAUUUUCACAUAUGUAGACUUU---AUCAUUCAUAUAAGCCAGAAGUCCAGU---GGAUCAACAUAU-CUAUU--CCAACUUUCCAAAACUUGAACUUUAAACU
.........((((.(((((..((....---.))...)))))......(((((..(((---((((......))-)))))--...)))))........))))......... (  -8.50)
>DroSec_CAF1 4507 90 - 1
------AUUUUCACAUUUGGUGACAUU---AUCAUCUAUAUAAGUCAAAAUUCCAGU---GGAUCAACACA-----UU--CCAACUUUCCCAAACUUGAACUUUAAACU
------...((((..(((((((((.((---((.......))))))))........((---(......))).-----..--.........)))))..))))......... ( -13.00)
>DroSim_CAF1 4017 90 - 1
------AUUUUCACAUUUGGUGACUUU---AUCAUCCAUAUAAGCCAAAAUUCCAGU---GGACCAACAUA-----UU--CCAACUUUCCCAAACUUGAACUUUAAACU
------...((((..((((((((....---.)))(((((................))---)))........-----..--.........)))))..))))......... (  -9.19)
>DroEre_CAF1 4635 98 - 1
------AUUUUAACUUUUAUAGACAAA---AUCAUCCAUAUAAGGCUGAAGCUCAGUAAUGCACUCUAACAUUAAAUG--CCAACUUCCCCAAACUUGAACUUCAAACU
------.......(((.(((.((....---....)).))).)))..(((((.(((((((((........)))))....--...............)))).))))).... (  -7.70)
>DroYak_CAF1 4060 103 - 1
------AUUAUGUGUUUUGGAACCAAAAAUAUCUUCCAUAUAAGCCUGAAGUCUAGUAAUGGAUUAAUCCAUUAAAUGGAUUAAGUUCCCCAAACUUGAACUUCAAACU
------.((((((((((((....)))))........)))))))...(((((((.(((...((((((((((((...)))))))))..)))....))).).)))))).... ( -22.60)
>consensus
______AUUUUCACAUUUGGAGACAUU___AUCAUCCAUAUAAGCCAGAAGUCCAGU___GGAUCAACACAU___AUU__CCAACUUUCCCAAACUUGAACUUUAAACU
...............................................((((((.(((...(((........................)))...))).).)))))..... ( -1.08 =  -1.64 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:56 2006