| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,103,946 – 12,104,065 |
| Length | 119 |
| Max. P | 0.683465 |
| Location | 12,103,946 – 12,104,065 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.97 |
| Mean single sequence MFE | -47.71 |
| Consensus MFE | -36.69 |
| Energy contribution | -38.80 |
| Covariance contribution | 2.11 |
| Combinations/Pair | 1.02 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.683465 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12103946 119 + 20766785 UCGGCAAGCGUUUGUGUGUCCGCAAAUGGGUCAA-GUGCGGAGAAAAGCCCUCGCUUUUCCUGCACACUUCGGCCAAUUGAUGAAGUUUUGCAUGCACUGGACCAGCUGGUCGUUUGCUG .((((((((......((((..(((((........-((((((.(((((((....)))))))))))))((((((..(....).)))))))))))..))))..((((....)))))))))))) ( -47.40) >DroSim_CAF1 8139 119 + 1 UCGGCAAGCGUUUGUGUGUCCACAAAUGGGUCAA-GUGCGGAGAAAAGCCCUCGCUUUUCCUGCACACUUCGGCCAAUUGAUGGAGUUUUGCAUGCACUGGACCAGCUGGUCGUUUGCUA ..(((((((((.((((..(((((((.(((.....-((((((.(((((((....))))))))))))).(....)))).))).))))....)))).))....((((....))))))))))). ( -47.10) >DroYak_CAF1 8679 120 + 1 UGGCAAGGCGUUUGUGUGUCCGCAAGUGGGUCAAGGUGCGGAGAAAAGCCCUCGCUUUUCCUGCCAACUUUGGCCAAUUGGUGGUGUUUGGGAUGCACUGGACCAGCUGGUCGUGCGCUG ......(((((..((((((((.((((..(((((((((((((.(((((((....)))))))))))..)))))))))...........))))))))))))..((((....))))..))))). ( -48.62) >consensus UCGGCAAGCGUUUGUGUGUCCGCAAAUGGGUCAA_GUGCGGAGAAAAGCCCUCGCUUUUCCUGCACACUUCGGCCAAUUGAUGGAGUUUUGCAUGCACUGGACCAGCUGGUCGUUUGCUG ..(((((((....((((((((((((...((((...((((((.(((((((....))))))))))))).....))))..))).)))........))))))..((((....))))))))))). (-36.69 = -38.80 + 2.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:55 2006