Locus 365

Sequence ID 2R_DroMel_CAF1
Location 2,351,108 – 2,351,228
Length 120
Max. P 0.996462
window717

overview

Window 7

Location 2,351,108 – 2,351,228
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.42
Mean single sequence MFE -37.08
Consensus MFE -35.50
Energy contribution -35.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.91
Structure conservation index 0.96
SVM decision value 2.70
SVM RNA-class probability 0.996462
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2351108 120 - 20766785
CCGCAAAAUCGGCUCGGCACAGCCGGGAAAUAAAGUCGCACAUAUUUUCAAAUAAAGCUGCCGUUAUCACAAAUUGACAGCAAAGUAUUGUGCGGCUGACUACUUUGUGUCAGCGGGUGC
((((........((((((...))))))......(((((((((((((((........(((((.(((......))).).)))))))))).)))))))))(((........))).)))).... ( -37.80)
>DroSec_CAF1 702 120 - 1
CCGCAAAAUCGGCUCGGCACAGCCGGGAAAUAAAGUCGCACAUAUUUUCAAAUAAAGCUGCCGUUAUCACAAAUUGACAGCAAAGUAUUGUGCGGCUGACUACUUUGUGCCAGCGGGGUC
........((.(((.(((((((..((.......(((((((((((((((........(((((.(((......))).).)))))))))).))))))))).....)))))))))))).))... ( -36.10)
>DroSim_CAF1 710 120 - 1
CCGCAAAAUCGGCUCGGCACAGCCGGGAAAUAAAGUCGCACAUAUUUUCAAAUAAAGCUGCCGUUAUCACAAAUUGACAGCAAAGUAUUGUGCGGCUGACUACUUUGUGCCAGCGGGGUC
........((.(((.(((((((..((.......(((((((((((((((........(((((.(((......))).).)))))))))).))))))))).....)))))))))))).))... ( -36.10)
>DroEre_CAF1 672 120 - 1
CCGCAAAAUCGGCUCGGCAGAGCCGGGAAAUAAAGUCGCACAUAUUUUCAAAUAAAGCUGCCGUUAUCACAAAUUGACAGCAAAGUAUUGUGCGGCUGACUACUUUGUGCCAGCGGGCGU
((((.....((((((....))))))((......(((((((((((((((........(((((.(((......))).).)))))))))).))))))))).((......)).)).)))).... ( -39.90)
>DroYak_CAF1 728 120 - 1
CCGCAAAAUCGGCUCGGCACAGCCGGGAAAUAAAGUCGCACAUAUUUUCAAAUAAAGCUGCCGUUAUCACAAAUUGACAGCAAAGUAUUGUGCGGCUGACUACUUUAUGCCAGCGGGGAC
((((........((((((...))))))......(((((((((((((((........(((((.(((......))).).)))))))))).)))))))))...............)))).... ( -35.50)
>consensus
CCGCAAAAUCGGCUCGGCACAGCCGGGAAAUAAAGUCGCACAUAUUUUCAAAUAAAGCUGCCGUUAUCACAAAUUGACAGCAAAGUAUUGUGCGGCUGACUACUUUGUGCCAGCGGGGGC
((((........((((((...))))))......(((((((((((((((........(((((.(((......))).).)))))))))).)))))))))...............)))).... (-35.50 = -35.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:29 2006