Locus 3642

Sequence ID 2R_DroMel_CAF1
Location 12,078,042 – 12,078,145
Length 103
Max. P 0.548499
window5928

overview

Window 8

Location 12,078,042 – 12,078,145
Length 103
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.99
Mean single sequence MFE -19.73
Consensus MFE -15.60
Energy contribution -15.63
Covariance contribution 0.03
Combinations/Pair 1.06
Mean z-score -1.56
Structure conservation index 0.79
SVM decision value 0.03
SVM RNA-class probability 0.548499
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12078042 103 - 20766785
UCCUCAUCG---CCGACGCCAUCAUUCAAAACAAUUCCAAAAGUUAAGUGCUUCUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGC--CUGCUU------------ACCCUC
.........---..............................(((((((((.....((((((..(((....)))..))))))...)))))))))--......------------...... ( -16.50)
>DroVir_CAF1 109142 97 - 1
UCCUCGUUG---GCAACGCCAUCAUUCAAAACAAUUUCA-AAGUUAAGUGCUUUUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGC--CUCCUU------------U-----
.....(.((---((...)))).)................-..(((((((((.....((((((..(((....)))..))))))...)))))))))--......------------.----- ( -20.60)
>DroGri_CAF1 95318 102 - 1
UCUUUGUUG---GCAACGCCAUCAUUCAAAACAAUUUCA-AAGUUAAGUGCUUUUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGC--CUCCUU------------UACCUC
....((.((---((...)))).))...............-..(((((((((.....((((((..(((....)))..))))))...)))))))))--......------------...... ( -21.00)
>DroWil_CAF1 105637 119 - 1
UCCACAUCCAUUCAGCCAUCAUCAUUCAAAACAAUUUCA-AAGUUAAGUGCUUUUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGCUCCUGCUUCAGUACUGAAUAAGCCUC
.........((((((........................-.((((((((((.....((((((..(((....)))..))))))...))))))))))..(((....)))))))))....... ( -22.60)
>DroMoj_CAF1 113611 102 - 1
UCUUCGCUG---GCAACGCCAUCAUUCAAAACAAUUUCA-AAGCUAAGUGCUUUUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGG--CUCCUU------------UACCUC
.....((((---((...))))..................-...((((((((.....((((((..(((....)))..))))))...)))))))))--).....------------...... ( -20.90)
>DroAna_CAF1 69211 103 - 1
UCCUCGUCG---UCAACGCCAUCAUUCAAAACAAUUCCAAAAGUUAAGUGCUUCUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGC--CUUCUU------------ACCCCC
.....(.((---....)).)......................(((((((((.....((((((..(((....)))..))))))...)))))))))--......------------...... ( -16.80)
>consensus
UCCUCGUCG___GCAACGCCAUCAUUCAAAACAAUUUCA_AAGUUAAGUGCUUUUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGC__CUCCUU____________AACCUC
..........................................(((((((((.....((((((..(((....)))..))))))...))))))))).......................... (-15.60 = -15.63 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:38 2006