| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,053,660 – 12,053,753 |
| Length | 93 |
| Max. P | 0.691736 |
| Location | 12,053,660 – 12,053,753 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 87.97 |
| Mean single sequence MFE | -27.37 |
| Consensus MFE | -17.19 |
| Energy contribution | -17.19 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.25 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.691736 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12053660 93 + 20766785 AGGGACUUUUCCCCCUGCAUACACAUACAUAUUUAUAUGCAUUUGGCUUUGUCUGUAUU------CGUUUGUUUGUAUGUGUGUGCGUUAUCCUGCACU ((((........))))(((((((((((((.((..(((((((...(((...)))))))).------.))..)).)))))))))))))............. ( -27.40) >DroSec_CAF1 54519 93 + 1 AGGGACCUUACCCCCUGCAUACACAUACAUA----CAUGCAUUUGGCUUUGUCUGUAUUGCUGUCCGUUUGUUUGU--GUGUGUGCGUAUUCCUGCACU ((((........))))((((((.((((((((----((.(((..((((...((.......)).).)))..))).)))--))))))).)))....)))... ( -28.70) >DroSim_CAF1 55110 93 + 1 AGGGACCUUACCCCCUGCAUACACAUACAUA----CAUGCAUUUGGCUUUGUCUGUAUUGCUGUUCGUUUGUUUGU--GUGUGUGCGUUUUCCUGCACU ((((........))))(((((((((((...(----((.((...((((..((....))..))))...)).))).)))--))))))))............. ( -26.00) >consensus AGGGACCUUACCCCCUGCAUACACAUACAUA____CAUGCAUUUGGCUUUGUCUGUAUUGCUGU_CGUUUGUUUGU__GUGUGUGCGUUUUCCUGCACU ((((........))))(((((((((((((.........((.....))......))))).......((......))...))))))))............. (-17.19 = -17.19 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:28 2006