Locus 3636

Sequence ID 2R_DroMel_CAF1
Location 12,044,002 – 12,044,121
Length 119
Max. P 0.632246
window5917

overview

Window 7

Location 12,044,002 – 12,044,121
Length 119
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 81.40
Mean single sequence MFE -26.33
Consensus MFE -17.16
Energy contribution -17.08
Covariance contribution -0.08
Combinations/Pair 1.31
Mean z-score -1.68
Structure conservation index 0.65
SVM decision value 0.20
SVM RNA-class probability 0.632246
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12044002 119 - 20766785
UGCUUAUUUCAUACUUACUGUCCAACCACUUGGAGUCGUAUUUCAGAGUCCUCUUGAAUUUAUAUUCCAAACGUUUAGCCGAAGUAUUAUACAGAUCAGUGCGGAAAAUAACCGUAUCC
..........((((((.(.((..(((...(((((((.(((.((((((....)).))))..))))))))))..)))..)).)))))))...........((((((.......)))))).. ( -21.30)
>DroVir_CAF1 53646 109 - 1
----------UUACUUACUGUCCAACCACUUGGAAUCAUAUUUGAGCGUGCGCUUGAAUUUGUAUUCCAAGCGCUUUGCCGACGUAUUAUACAAAUCCGUUCGAAAGAUCACAGUAUCC
----------.....((((((.....(.((((((((((.(((..(((....)))..))).)).)))))))).)((((.(.((((.(((.....))).)))).)))))...))))))... ( -29.80)
>DroGri_CAF1 53620 119 - 1
UUUUUUUUUUUUACUUACUGUCCAACCACUUGGAAUCAUAUUUGAGCGUGCGCUUGAAUUUGUAUUCCAAGCGCUUUGCUGACGUAUUAUAUAAAUCCGUUCGAAAGAUCACAGUAUCC
...............((((((.....(.((((((((((.(((..(((....)))..))).)).)))))))).)((((.(.((((.(((.....))).)))).)))))...))))))... ( -29.80)
>DroWil_CAF1 59328 119 - 1
UUCUUUUCUAAUACUUACUGUCCAACCAUUUGGAAUCAUAUUUCAGUGUUCUCUUGAAUUUGUAUUCCAAACGUUUUGCUGAUGUAUUAUAUAAAUCGGUACGGAAAAUUACGGUAUCG
...............((((((....((.((((((((((.((((.((......)).)))).)).)))))))).....(((((((...........))))))).))......))))))... ( -22.40)
>DroMoj_CAF1 65882 119 - 1
UCUCUUCUCGUUACUUACUGUCCAACCACUUGGAAUCAUAUUUGAGCGUACGCUUGAAUUUGUAUUCCAGGCGCUUUGCCGACGUAUUAUACAAAUCCGUUCGAAAGAUCACAGUAUCA
...............((((((.....(.((((((((((.(((..(((....)))..))).)).)))))))).)((((.(.((((.(((.....))).)))).)))))...))))))... ( -29.50)
>DroAna_CAF1 40011 119 - 1
UAAUUGUUUCAUACUUACUGUCCAACCACUUGGAGUCGUACUUGAGAGUCCUCUUGAAUUUAUAUUCCAAGCGUUUAGCCGAAGUGUUAUAGAGAUCAGUACGGAAGAUGACCGUGUCC
..((((((((((((((.(.((..(((..((((((((.(((.(..(((....)))..)...))))))))))).)))..)).)))))))....)))).))))((((.......)))).... ( -25.20)
>consensus
UUCUUUUUUCAUACUUACUGUCCAACCACUUGGAAUCAUAUUUGAGCGUCCGCUUGAAUUUGUAUUCCAAGCGCUUUGCCGACGUAUUAUACAAAUCCGUUCGAAAGAUCACAGUAUCC
...............((((((.......((((((((((.((((((((....)))))))).)).))))))))((......)).............................))))))... (-17.16 = -17.08 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:27 2006