| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,028,150 – 12,028,245 |
| Length | 95 |
| Max. P | 0.659734 |
| Location | 12,028,150 – 12,028,245 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 84.51 |
| Mean single sequence MFE | -23.28 |
| Consensus MFE | -12.10 |
| Energy contribution | -14.10 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.74 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.659734 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12028150 95 + 20766785 CAAAGGC--ACAAAAAA----CACACCGAGUGCAGAGUCGUUGUAAACAAACGAG--UGGAGGCACAACAAUGUGCAACACAAUUGCUGCCGCACUUAAAAUU .......--........----......((((((....(((((.......)))))(--((...(((((....)))))..)))..........))))))...... ( -23.50) >DroSec_CAF1 29331 97 + 1 CAAAGGC--AGCAAAAACA--CACACCGAGUGCUGAGUCGUUGUAAACAAACGAG--UGGAGGCACAACAAUGUGGAACACAAUUGCUGCCGCACUUAAAAUU ....(((--(((((.....--........(((((.(.(((((.......))))).--)...))))).....((((...)))).))))))))............ ( -29.00) >DroEre_CAF1 29060 94 + 1 CAA-GGC--AGGAAAAA----CACACCGAGUGCAGAGUCGCUGUAAACAAACGAG--UGGAGGCACAACAAUGUGCAACACAAUUGCUGCCGCACUUAAAAUU ...-(((--((.((...----......(..(((((.....)))))..)......(--((...(((((....)))))..)))..)).)))))............ ( -25.80) >DroYak_CAF1 29097 97 + 1 CAAAGGCAAAGGAAAAA----CACACCGAGUGCAGAGUCGUUGUAAACAAACGAG--UGGAGGCACAACAAUGUGCAACACAAUUGCUGCCGCACUUAAAAUU ....((((..((.....----....))....((((..(((((.......)))))(--((...(((((....)))))..)))..))))))))............ ( -24.20) >DroAna_CAF1 24957 93 + 1 UCCAAGU--ACCUAAAACAAACACACACAUU--------GUAGUAAACAAACGAGAGUACAAGAACAACAAUGUGCAACACAAUUGCUGCCGCACUUAAAAUU ...((((--................((((((--------((.((......((....))......)).))))))))..........((....))))))...... ( -13.90) >consensus CAAAGGC__AGCAAAAA____CACACCGAGUGCAGAGUCGUUGUAAACAAACGAG__UGGAGGCACAACAAUGUGCAACACAAUUGCUGCCGCACUUAAAAUU ...........................((((((....(((((.......))))).......(((((((...((((...)))).))).))))))))))...... (-12.10 = -14.10 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:18 2006