| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,022,349 – 12,022,449 |
| Length | 100 |
| Max. P | 0.607508 |
| Location | 12,022,349 – 12,022,449 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 78.68 |
| Mean single sequence MFE | -26.52 |
| Consensus MFE | -14.06 |
| Energy contribution | -13.83 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.607508 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12022349 100 - 20766785 CACGGAAACG-AACGAUUUGGCAAGCAUUU-UUGGCU-UUUGCGGAAGUAC-GGCGAAAAAUCGUUGACAAGCGACAAAACACUUGACAGCGUCAGCAGAGCCA------- ..((....))-.......((((..((((((-((.(((-..(((....))).-))).))))))(((((.((((.(......).)))).)))))...))...))))------- ( -29.90) >DroVir_CAF1 23088 87 - 1 -------GCA-AACUAUUUGGCAAGCAUUU-UCG-C----AACGGAAGUU---GUGAAAAAUCGUUGACAAGCGACAAAACACUUGACAGCGUCAGCAGCCCAA------- -------...-........(((..((.(((-(((-(----(((....)))---)))))))..(((((.((((.(......).)))).)))))...)).)))...------- ( -28.90) >DroPse_CAF1 76275 111 - 1 CGGGGUUUCAAAGCGAUUUGGCAAGCAUUUUUUGGCUUUUUGCGGAAGUUUGGGCGAAAAAUCGUUGACAAGCGACAAAACACUUGACAGCGUCAGCAGAGCAGAGUAUGU ............((..((((((..(.((((((((.((....((....))..)).)))))))))((((.((((.(......).)))).))))))))).)..))......... ( -25.90) >DroGri_CAF1 23104 87 - 1 -------GCA-AACUAUUUGGCAACCAUUU-CGG-C----UACGGAAGUU---GUGAAAAAUCGUUGACAAGCGACAAAACACUUGACAGCGUCAGCAACCCAA------- -------((.-.....(((.(((((..(((-((.-.----..))))))))---)).)))...(((((.((((.(......).)))).)))))...)).......------- ( -21.20) >DroMoj_CAF1 26879 94 - 1 CACGCACACA-AACUAUUUGGCAAGCAUUU-GCG-C----AGCGGAAGUU---GUGAAAAAUCGUUGACAAGCGACAAAACACUUGACAGCGUCAGCAGCCCAA------- ..........-........(((..((....-.((-(----(((....)))---)))......(((((.((((.(......).)))).)))))...)).)))...------- ( -24.50) >DroAna_CAF1 19575 98 - 1 CAUGACUGCC-AACGAUUUGGCAAGCAUUUUUUGGCU-UUUGCGGAAGUUU-GGCGAAAAAUCGUUGACAAGCGACAAAACACUUGACAGCGUCAGCAG---CA------- ......((((-((....)))))).((..(((((.(((-...((....))..-))).)))))..((((((..((..(((.....)))...)))))))).)---).------- ( -28.70) >consensus CA_G___GCA_AACGAUUUGGCAAGCAUUU_UUG_C____UGCGGAAGUU___GCGAAAAAUCGUUGACAAGCGACAAAACACUUGACAGCGUCAGCAGCCCAA_______ .................(((((...................((....))..............((((.((((.(......).)))).)))))))))............... (-14.06 = -13.83 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:12 2006