| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,019,875 – 12,019,970 |
| Length | 95 |
| Max. P | 0.777062 |
| Location | 12,019,875 – 12,019,970 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 78.33 |
| Mean single sequence MFE | -27.55 |
| Consensus MFE | -18.14 |
| Energy contribution | -18.22 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.777062 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12019875 95 - 20766785 GAGCACAAAGGUGGUAGAACUUG------AAGUUGUCAGCUUGUUAGGGCGAGUUCCUAAGCCUUUA-------CUUUUGGCUAAGACAAAAAGUGCUUGCUGGCUGG ((((((..((((......)))).------...((((((((((((....)))))))....((((....-------.....))))..)))))...))))))......... ( -25.60) >DroSec_CAF1 21333 90 - 1 UAGCACAAAGGU-GUAGAACUUC------AAGUUGUCAGCUUGUUAGGGCGAGU-UCUAAGCCUUUG-------CUUUUGGCUAAGACAAAAAGUGCUAGCUGGU--- ((((((((((((-.(((((((((------((((.....))))).......))))-)))).)))))).-------.(((((.......))))).))))))......--- ( -28.71) >DroSim_CAF1 21636 91 - 1 UGGCACAAAGGU-GUAGAACUUC------AAGUUGUCAGCUUGUUAGGGCGAGUUUCUAAGCCUUUG-------CUUUUGGCUAAGACAAAAAGUGCUAGCUGGU--- ((((((((((((-.(((((.(((------..(....).((((....))))))).))))).)))))).-------.(((((.......))))).))))))......--- ( -24.90) >DroEre_CAF1 21178 90 - 1 GAGCACAAAGGU-GUAGAACUCC------AAGUUGUCAGCUUGUUAGGGCGAGU-UCUAAGCCUU----------UGCUGGCUAAGACAAAAAGUGCUUGUUUGCAGG .(((.(((((((-.(((((((((------((((.....))))).......))))-)))).)))))----------))...)))...........(((......))).. ( -28.61) >DroYak_CAF1 20949 103 - 1 GAGCACAAAGGU-GUAGAACUCCAACUUCAAGUUGUCAGCUUGUUAGGGCGAGU-UCUAAGCCUUGG---CUGGCUGCUGGCUAAGACAAAAAGUACUUGCUUGCUGC .(((...(((((-.((((((((...((.(((((.....)))))..))...))))-)))).))))).)---)).((.((.(((.(((((.....)).)))))).)).)) ( -36.00) >DroAna_CAF1 17040 93 - 1 AAAAACAAAGGU-G--GAACUUG------AAGUUGUCAGCUUGUUAAGAGGAGU-UUUCUGCCUUCCAUUCGAGCUGGGGCCAAAGACAAAAAGUGCUUUCUG----- ........(((.-(--(.((((.------...(((((((((((....((((.((-.....))))))....))))))(....)...))))).)))).)).))).----- ( -21.50) >consensus GAGCACAAAGGU_GUAGAACUUC______AAGUUGUCAGCUUGUUAGGGCGAGU_UCUAAGCCUUUG_______CUGUUGGCUAAGACAAAAAGUGCUUGCUGGC___ ((((((..((((......))))..........(((((.((((((....)))))).....((((................))))..)))))...))))))......... (-18.14 = -18.22 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:11 2006