| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,014,065 – 12,014,182 |
| Length | 117 |
| Max. P | 0.626848 |
| Location | 12,014,065 – 12,014,182 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 81.42 |
| Mean single sequence MFE | -38.50 |
| Consensus MFE | -24.94 |
| Energy contribution | -24.42 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.626848 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12014065 117 - 20766785 AGCAAUGGUGGCAAUGGUGGCGUCAAG-AAUGUAAGCUGCCAAGUUGUCGAAC-UGGCGGAUCUGAUGAAACAGGUGCCGCCGAACCAGAUGCACAAGUUCAAAAUGUUUGCCAAGAAG .(((.((((((((((((..((..((..-..))...))..)))..)))))....-(((((((((((......))))).)))))).))))..))).......................... ( -38.40) >DroSec_CAF1 15435 117 - 1 AGCAAUGGUGGUAAUGGUGGCGUCAAG-AAUGUAAGCUGCCAAGUUGUUGAAC-UGGCGGAUCUGAUGAAACAGGUGCCGCCGAACCAGAUGCACAAGUUCAAAAUGUUUGCCAAGAAG ........(((((((((..((..((..-..))...))..))).....((((((-(((((((((((......))))).)))))......(.....).))))))).....))))))..... ( -36.00) >DroSim_CAF1 15948 117 - 1 AGCAAUGGUGGUAAUGGUGGCGUCAAG-AAUGUAAGCUGCCAAGUUGUCGAAC-UGGCGGAUCUGAUGAAACAGGUGCCGCCGAACCAGAUGCACAAGUUCAAAAUGUUUGCCAAGAAG .((((.(((((((...((..(((((.(-(.......((((((.(((....)))-)))))).)))))))..))...)))))))((((...........)))).......))))....... ( -34.60) >DroEre_CAF1 15466 117 - 1 AGUAAUGGUGGCAAUGGUGGGGCCAAA-AAGACAAGCUGCCAAGUUGUCCAAC-UGGCGGAUCUGAUGAAGCAGGUGCCGCCCAACCAGUUGCCGAAGUUCCAGAUGUUUGCCAAGAAG .....((((((((((((((((((((..-..(((((.((....)))))))....-))))(((((((......))))).)).))).)))).)))))(......)........))))..... ( -38.80) >DroYak_CAF1 15216 117 - 1 AGUAAUGGCGGAAGUGGUGGGGCCAAA-AAGACAAGCUGCCAAGUUAUACAAC-UGGCGGAUCUGAAGAAGCAGGUGCCGCCGAGCCAGUUGCCGAAGUUCCAAAUGUUUGCCAAGAAG .....(((((((.....((((((....-..(((..(((....((((....)))-)((((((((((......))))).))))).)))..)))......))))))....)))))))..... ( -38.00) >DroPer_CAF1 64578 114 - 1 AACGGCGGUGGCAGUGGCCCGACCAGGGCACCCAAGCAGC--AGCUGAUGAACAUGGCGGACAUGCUGCAGCGUGUGCCGCCCAACCAGCUGCCACAGUUCCAGAUGUU---CAAGAGG ...((..((((((((.((((.....)))).....(((...--.))).........(((((((((((....)))))).)))))......))))))))....)).......---....... ( -45.20) >consensus AGCAAUGGUGGCAAUGGUGGCGCCAAG_AAUGCAAGCUGCCAAGUUGUCGAAC_UGGCGGAUCUGAUGAAACAGGUGCCGCCGAACCAGAUGCACAAGUUCAAAAUGUUUGCCAAGAAG .(((.(((((((((((((((................))))))..)))))......((((((((((......))))).)))))..))))..))).......................... (-24.94 = -24.42 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:09 2006