Locus 3622

Sequence ID 2R_DroMel_CAF1
Location 12,010,967 – 12,011,065
Length 98
Max. P 0.820111
window5897

overview

Window 7

Location 12,010,967 – 12,011,065
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 95.31
Mean single sequence MFE -19.44
Consensus MFE -19.56
Energy contribution -19.32
Covariance contribution -0.24
Combinations/Pair 1.05
Mean z-score -1.14
Structure conservation index 1.01
SVM decision value 0.68
SVM RNA-class probability 0.820111
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12010967 98 + 20766785
AUUUAUAUACCUAGCUGUGUUGGCCAAUGAAUACACAUAAAUUAAAGCAGGGUUUAAGCGAAAUGUUUACAUUGCCCGCCAAAAAGCAGACCGAGCCA
..............((((.(((((..(((......)))...........((((.(((((.....)))))....)))))))))...))))......... ( -19.50)
>DroSec_CAF1 12308 98 + 1
AUUUAUAUACCUAGCUGUGUUGGCCAAUGAAUACACAUAAAUUAAAGCAGGGUUUAAGCGAAAUGUUUACAUUGCCCGCCAAAAAGCAGACCGAACCA
..............((((.(((((..(((......)))...........((((.(((((.....)))))....)))))))))...))))......... ( -19.50)
>DroSim_CAF1 12321 98 + 1
AUUUAUAUACCUAGCUGUGUUGGCCAAUGAAUACACAUAAAUUAAAGCAGGGUUUAAGCGAAAUGUUUACAUUGCCCGCCAAAAAGCAGACCGAACCA
..............((((.(((((..(((......)))...........((((.(((((.....)))))....)))))))))...))))......... ( -19.50)
>DroEre_CAF1 12317 98 + 1
AUUUAUAUACCUAGCUAUAUUGGCCGAUGAAUACACAUAAAUAAAAGCAGGGCUUAAGCGAAAUGUUUACAUUGCCCGCCAAAAAGCAGACCAAACCA
.............(((...(((((..(((......)))...........((((.(((((.....)))))....)))))))))..)))........... ( -18.80)
>DroYak_CAF1 12114 98 + 1
AUUUAUAUACCCAGCUAUAUUGGCCGAUGAAUACACAUAAAUUAAAGCAGGGCUUAAGCGAAAUGUUUACAUUGCCCGCCAAAGAGCAGACCGAGCCA
.............(((...(((((..(((......)))...........((((.(((((.....)))))....)))))))))..)))........... ( -19.90)
>consensus
AUUUAUAUACCUAGCUGUGUUGGCCAAUGAAUACACAUAAAUUAAAGCAGGGUUUAAGCGAAAUGUUUACAUUGCCCGCCAAAAAGCAGACCGAACCA
.............(((...(((((..(((......)))...........((((.(((((.....)))))....)))))))))..)))........... (-19.56 = -19.32 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:07 2006