Locus 3621

Sequence ID 2R_DroMel_CAF1
Location 12,009,664 – 12,009,770
Length 106
Max. P 0.648511
window5896

overview

Window 6

Location 12,009,664 – 12,009,770
Length 106
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 95.19
Mean single sequence MFE -23.70
Consensus MFE -18.82
Energy contribution -19.94
Covariance contribution 1.12
Combinations/Pair 1.08
Mean z-score -1.70
Structure conservation index 0.79
SVM decision value 0.24
SVM RNA-class probability 0.648511
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12009664 106 + 20766785
AUAUAUUUGCAACUAGCCAAAUUUGUGAAACUGUAGAACGGUAUAACUAAUAAGACACUUAUUAUGCGAUGGCGGUCUGGUAACGUUAGACCAAGUUUAACGAUAU
..(((((...((((.((((...((((...((((.....)))).....(((((((...))))))).))))))))(((((((.....))))))).))))....))))) ( -21.90)
>DroSec_CAF1 11048 106 + 1
AAAUAUUUGUUACUAGCCAAAUUUGUCAAACUGUAGAACGGUAUAACUAAUAAGACACUUAUUAUGCGAUGGCGGUCUGGUAACGUUAGACCAAGUUUAACGAUAU
........((((((((((....(..((..((((.....)))).....(((((((...)))))))...))..).)).))))))))(((((((...)))))))..... ( -24.10)
>DroSim_CAF1 11054 106 + 1
AAAUAUUUGUUACUAGCCAAAUUUGUCAAACUGUAGAACGGUAUAACUAAUAAGACACUUAUUAUGCGAUGGCGGUCUGGUAACGUUAGACCAAGUUUAACGAUAU
........((((((((((....(..((..((((.....)))).....(((((((...)))))))...))..).)).))))))))(((((((...)))))))..... ( -24.10)
>DroEre_CAF1 8771 106 + 1
AAAUAUUUGUCACUUACCAAAUUUGCCAAACUGUAGAACGGUAUAACUAAUAAGACACUUAUUAUGCGAUGGCGGUCUGGUAACGUUAGACCAAGUUUAACGAUAU
.......((((..((((((...((((((.((((.....)))).....(((((((...))))))).....))))))..)))))).(((((((...))))))))))). ( -25.50)
>DroYak_CAF1 10829 106 + 1
AAAUGUUUGUUACCUAACAAAUUUGUCAAACUGUAGAACGGUAUAACUAAUAAGACACUUAUUAUGCGAUGGUGGUCUGGUAACGUUAGACCAAGUUUAACGAUAU
........((((((..((....(..((..((((.....)))).....(((((((...)))))))...))..)..))..))))))(((((((...)))))))..... ( -22.90)
>consensus
AAAUAUUUGUUACUAGCCAAAUUUGUCAAACUGUAGAACGGUAUAACUAAUAAGACACUUAUUAUGCGAUGGCGGUCUGGUAACGUUAGACCAAGUUUAACGAUAU
..(((((.((((((((((....((((...((((.....)))).....(((((((...))))))).))))....)).))))))))(((((((...)))))))))))) (-18.82 = -19.94 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:06 2006