Locus 360

Sequence ID 2R_DroMel_CAF1
Location 2,336,535 – 2,336,647
Length 112
Max. P 0.843497
window710

overview

Window 0

Location 2,336,535 – 2,336,647
Length 112
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 67.25
Mean single sequence MFE -29.99
Consensus MFE -11.40
Energy contribution -12.04
Covariance contribution 0.64
Combinations/Pair 1.23
Mean z-score -1.98
Structure conservation index 0.38
SVM decision value 0.76
SVM RNA-class probability 0.843497
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2336535 112 + 20766785
CUGGCCGGCGGAGGACAAACUUUUCGGUCACGAGACAAAAGGCGCAGAUAACAGCUAUGAAAA------CAGGAAGUUGCCCCAGGCCACCGACCAGUGCUGCCAAGGGAAACACCGA
((((.(((.((.((...((((((..((((....)))....(((..........))).......------)..))))))...))...)).))).)))).........((......)).. ( -28.30)
>DroPse_CAF1 108569 96 + 1
AUUUCUGGCCAAAGAGAAACUUGUUGGCCGAAAGACAAAAGGCCUUGAUAACAGCUAUAAAAAAAAAAACAAAGAGCUGCCAGAGGC-ACUGUCCAG---------------------
.((((.((((((.(((...))).))))))))))((((....(((((.....(((((..................)))))...)))))-..))))...--------------------- ( -27.87)
>DroEre_CAF1 100753 110 + 1
AUGGCCGGCGGAGGACAAACUUUUCGGGCGCAAGACAAAAGGCGCAGAUAACAGCUAUGAAAA------CAGGAAGUUGCCCCUGGCCACCGACGAAGGCUGC--CGGAAAACACUGA
....(((((((........((((((((.(....)......(((((........))........------((((........))))))).)))).)))).))))--))).......... ( -33.00)
>DroYak_CAF1 97386 110 + 1
CUGGCCGGCGGAGGACAAACUUUUUG--UCCAGGACAAAAGGCGCAGAUAACAGCUAUGAAAA------CAGGAAGUUGCCCCAGGCCACCGACUAUUGGUGCGUAGGAAUGCACUGA
.(((((((.((..(((...(((((((--((...))))))))).((........))........------......))).)))).))))).......(..((((((....))))))..) ( -32.90)
>DroPer_CAF1 110863 96 + 1
AUUUCUGGCCAAAGAGAAACUUGUUGGCCGAAAGACAAAAGGCCUUGAUAACAGCUAUAAAAAAAAAAACAAAGAGCUGCCAGAGGC-ACUGUCCAG---------------------
.((((.((((((.(((...))).))))))))))((((....(((((.....(((((..................)))))...)))))-..))))...--------------------- ( -27.87)
>consensus
AUGGCCGGCGGAGGACAAACUUUUUGGCCGCAAGACAAAAGGCGCAGAUAACAGCUAUGAAAA______CAGGAAGUUGCCCCAGGCCACCGACCAG_G_UGC___GG_A__CAC_GA
.(((((((((.....).(((((((((..(....)......(((..........))).............))))))))))))...)))))............................. (-11.40 = -12.04 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:22 2006