| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,972,786 – 11,972,879 |
| Length | 93 |
| Max. P | 0.649572 |
| Location | 11,972,786 – 11,972,879 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 76.18 |
| Mean single sequence MFE | -27.37 |
| Consensus MFE | -13.77 |
| Energy contribution | -13.63 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.649572 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11972786 93 - 20766785 UUUACUCAGUCACAUUAUUAGA------------GGGGCCA-AAGGUGGUCGUCCGUAUACA---GCGGAUUGAUGUUGUUUAAUUAAAUUAAACCGCCACGGCGCCAC ......................------------((.(((.-..(((((((((((((.....---))))).))))...(((((((...)))))))))))..))).)).. ( -26.30) >DroVir_CAF1 28085 95 - 1 GUGGCU----UGGCUUAUUAAA-GUAAGCUUUUUGGGGCCGAAAGGUGG----CCACAUACA---ACGGAUUCAUGUUGUUUAAUUAAAUUAAACCGCC-UGGCGCCG- ((((((----.(((((((....-))))))).......(((....)))))----)))).....---.(((..(((.((.(((((((...))))))).)).-)))..)))- ( -31.80) >DroGri_CAF1 26638 95 - 1 GUGGCU----CGGCUUAUUAAA-GUAAGCU--UUGGGGCCAAAAGGUGG----CCACAUACAACAACGGAUUCAUGUUGUUUAAUUAAAUUAAACCGC--UGUCGCCG- .(((((----((((((((....-)))))))--...))))))...(((((----(..(.....((((((......))))))(((((...)))))...).--.)))))).- ( -27.40) >DroYak_CAF1 24501 93 - 1 UUUACUCGGUCACAUUAUUAGA------------GGGGCCA-AAGGUGGUCGUCCGUAUACA---GCGGAUUGAUGUUGUUUAAUUAAAUUAAACCGCCACGGCGCCAC ......................------------((.(((.-..(((((((((((((.....---))))).))))...(((((((...)))))))))))..))).)).. ( -26.30) >DroAna_CAF1 24891 87 - 1 UUUGCU----CAUAUUAUUAGA------------GG-GCCA-AAGGUGGUCGUCCGCAUACA---ACGGAUUGAUGUUGUUUAAUUAAAUUAAACCGCCAUGGCGCCA- ......----............------------((-((((-..((((((((((((......---.)))).))))...(((((((...))))))))))).)))).)).- ( -23.10) >DroMoj_CAF1 31868 93 - 1 GUGGCU----UGGCUUAUUAAAGGUAAGCU--UUGGGGCCAAAAGGUGG----CCACAUACA---ACGGAUUCAUGUUGUUUAAUUAAAUUAAACCGC--UGGAGCCG- ((((((----((((((....((((....))--)).))))))......))----)))).....---.(((.((((.((.(((((((...))))))).))--)))).)))- ( -29.30) >consensus GUGGCU____CAGAUUAUUAAA____________GGGGCCA_AAGGUGG____CCACAUACA___ACGGAUUCAUGUUGUUUAAUUAAAUUAAACCGCC_UGGCGCCA_ ..................................((.(((.....((((....))))..................((.(((((((...))))))).))...))).)).. (-13.77 = -13.63 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:31 2006