Locus 3594

Sequence ID 2R_DroMel_CAF1
Location 11,970,441 – 11,970,556
Length 115
Max. P 0.998200
window5858

overview

Window 8

Location 11,970,441 – 11,970,556
Length 115
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 98.38
Mean single sequence MFE -24.11
Consensus MFE -23.11
Energy contribution -23.08
Covariance contribution -0.03
Combinations/Pair 1.07
Mean z-score -1.88
Structure conservation index 0.96
SVM decision value 3.03
SVM RNA-class probability 0.998200
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11970441 115 - 20766785
AUAAAUAUUCAGUGGCCAUUAAAUGCAGUUAUACAUAUUAAAAAUUUGUACUGCAUUUGUGAUUUUUUGCAUUUUGUCUGUGGCAAAUAAAUAUUUGAUUGCCCAUUUGUCACAC
...........((((((((.(((((((((...(((...........))))))))))))))).................((.(((((.(((....))).)))))))...))))).. ( -24.30)
>DroSec_CAF1 21699 115 - 1
AUAAAUAUUCAGUGGCCAUUAAAUGCAGUUAUACAUAUUAAAAAUUUGUACUGCAUUUGUGAUUUUUUGCAUUUUGUCUGUGGCAAAUAAAUAUUUGAUUGCCCAUUUGUCACAC
...........((((((((.(((((((((...(((...........))))))))))))))).................((.(((((.(((....))).)))))))...))))).. ( -24.30)
>DroSim_CAF1 25200 115 - 1
AUAAAUAUUCAGUGGCCAUUAAAUGCAGUUAUACAUAUUAAAAAUUUGUACUGCAUUUGUGAUUUUUUGCAUUUUGUCUGUGGCAAAUAAAUAUUUGAUUGCCCAUUUGUCACAC
...........((((((((.(((((((((...(((...........))))))))))))))).................((.(((((.(((....))).)))))))...))))).. ( -24.30)
>DroEre_CAF1 21839 115 - 1
AUAAAUAUUCAGUGGCCAUUAAAUGCAGUUAUACAUAUUAAAAUUUUGUACAGCACUUGUGAUUUUUUGCAUUUUGUCUGUGGCAAAUAAAUAUUUGAUUGCCCAUUUGUCACAC
...........(((((........(((((((...(((((.....(((((((((((..((..(....)..))...)).)))).)))))..))))).)))))))......))))).. ( -22.94)
>DroYak_CAF1 22170 115 - 1
AUAAAUAUUCAGUGGCCAUUAAAUGCAGUUAUACAUAUUAAAAAUUUGUGCUGCAUUUGUGAUUUUUUGCAUUUUGUCUGUGGCAAAUAAAUAUUUGAUUGCCCAUUUGUCACAC
...........((((((((.(((((((((...(((...........))))))))))))))).................((.(((((.(((....))).)))))))...))))).. ( -24.60)
>DroAna_CAF1 23057 115 - 1
AUAAAUAUUCAGUGGCUAUUAAAUGCAGUUAUACAUAUUAAAAAUUUGUGCUGCAUUUGUGAUUUUUUGCAUUUUGUCUGUGGCAAAUAAAUAUUUGAUUGCCCAUUUGUCACAC
...........(((((...((((((((((...(((...........)))))))))))))...................((.(((((.(((....))).)))))))...))))).. ( -24.20)
>consensus
AUAAAUAUUCAGUGGCCAUUAAAUGCAGUUAUACAUAUUAAAAAUUUGUACUGCAUUUGUGAUUUUUUGCAUUUUGUCUGUGGCAAAUAAAUAUUUGAUUGCCCAUUUGUCACAC
...........((((((((.(((((((((...(((...........))))))))))))))).................((.(((((.(((....))).)))))))...))))).. (-23.11 = -23.08 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:29 2006