Locus 3591

Sequence ID 2R_DroMel_CAF1
Location 11,961,172 – 11,961,271
Length 99
Max. P 0.635728
window5854

overview

Window 4

Location 11,961,172 – 11,961,271
Length 99
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.85
Mean single sequence MFE -36.34
Consensus MFE -19.07
Energy contribution -20.02
Covariance contribution 0.95
Combinations/Pair 1.31
Mean z-score -1.72
Structure conservation index 0.52
SVM decision value 0.21
SVM RNA-class probability 0.635728
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11961172 99 + 20766785
----CAGUCAAAUG--CCGGCGAAAAGGAUCAGCUGGCGGCGUUUGGUGGCACUACUGCCGAAUUCGAUAGGUUUGUCAUUAAAA---------CCGGUGA------CACCUCAUUUGAG
----..((((...(--(((((((......)).))))))((..((((((((((...(((.((....)).)))...)))))))))).---------))..)))------)..(((....))) ( -31.80)
>DroSec_CAF1 12483 99 + 1
----CAGUCAAAUG--CCGGCGAAAAGGAUCAGCUGGCGGCGUUUGGCGGCACUACUGCCGAAUUCCAUAGGUCUGUCAUUAAAA---------CCGGUGA------CGCCUCAUUUGAG
----...(((((((--(((((((......)).))))))((.(((((((((.....))))))))).))..((((..((((((....---------..)))))------))))).)))))). ( -37.40)
>DroSim_CAF1 15623 99 + 1
----CAGUCAAAUG--CCGGCGAAAAGGAUCAGCUGGCGGCGUUUGGCGGCACUACUGCCGAAUUCCAUAGGUCUGUCAUUAAAA---------CCGGUGA------CGCCUCAUUUGAG
----...(((((((--(((((((......)).))))))((.(((((((((.....))))))))).))..((((..((((((....---------..)))))------))))).)))))). ( -37.40)
>DroEre_CAF1 12613 99 + 1
----CAGUCAAAUG--CCGGCGAAAAGGAUCAGCUGGCGGCGUUUGGUAUCACUGCUGCCGCAUUCCAUAGGACUGCCCAUAAAA---------GCGGUGA------CGCCCCAUUUGAG
----...(((((((--(((((((......)).))))))((.....((..((((((((...(((.(((...))).))).......)---------)))))))------..)))))))))). ( -36.30)
>DroYak_CAF1 12643 99 + 1
----CGCUCAAAUG--CCAGCGAAAAGGAUCAGCUGGCGGCGUUUGGUGGCACUACUGCCCCAUUCCAUAGGACUACCCAUAAAA---------GCGGUAA------CGCCUCAUUUGAG
----..((((((((--(((((((......)).))))))(((((.(((.((((....)))))))...........(((((......---------).)))))------))))..))))))) ( -37.00)
>DroAna_CAF1 13053 120 + 1
UUCGCGCACAAAUCACUCCACGAAGCGGAUCAGUUGGCGGCGAUUGAUGUCGGUGCUGCCCAGCUCGAUUGUCCUGCCGCUGGGAUGUGCCCCACUGGCGAAAGCACCACUCGACUUGAA
.((((((.(((.....(((.......)))....))))).))))((((.((.((((((.((((((..............))))))...((((.....))))..))))))))))))...... ( -38.14)
>consensus
____CAGUCAAAUG__CCGGCGAAAAGGAUCAGCUGGCGGCGUUUGGUGGCACUACUGCCGAAUUCCAUAGGUCUGCCAUUAAAA_________CCGGUGA______CGCCUCAUUUGAG
.......(((((((..(((((((......)).))))).((.(((((((((.....))))))))).)).............................((((.......)))).))))))). (-19.07 = -20.02 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:25 2006