Locus 3586

Sequence ID 2R_DroMel_CAF1
Location 11,933,701 – 11,933,820
Length 119
Max. P 0.691169
window5844

overview

Window 4

Location 11,933,701 – 11,933,820
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.68
Mean single sequence MFE -43.75
Consensus MFE -28.03
Energy contribution -27.68
Covariance contribution -0.35
Combinations/Pair 1.38
Mean z-score -2.31
Structure conservation index 0.64
SVM decision value 0.33
SVM RNA-class probability 0.691169
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11933701 119 - 20766785
CCUUCACGUUGGAGGAACGCCAGCGUUUGUGUAUCCAUGGACUCAUGCCGGCCUGCGUU-CGAACGUACGAUGAGCAGAUGUUGGCCAUCGAGUCCAACUUUCACUCCUUCGAAUCGAAU
..(((...(((((((((((....)))..(((......(((((((((((((((((((..(-((......)))...))))..))))).))).))))))).....)))))))))))...))). ( -42.10)
>DroPse_CAF1 40633 119 - 1
AUUUCACCAUUGAAGAGCGGCAGAGCCUGCAGGUGCACGGCCUGUUUCCAGC-GGCGUUCCGCACCAUGCAGGAGCAGGUGUUCGCCGUUGCGGCAAACUUCCAUGCGCGUGCCACGAAA
.(((((....))))).(.((((...((((((((((((((.((((....))).-).)))...))))).)))))).(((((.(((.((((...)))).)))..)).)))...)))).).... ( -47.10)
>DroSec_CAF1 35236 119 - 1
CCUUCACUUUGGAGGAACGCCAGCGUUUGUGUAUCCAUGGACUCAUGCCGGCCUGCGUG-CGAACCUACGAUGAGCAGAUGCUGGCCAUCGAGUCCAACUUUCACUCCUUCGAAUCGAAU
..(((..((((((((((((....)))..(((......(((((((((((((((((((...-((......))....))))..))))).))).))))))).....))))))))))))..))). ( -43.30)
>DroSim_CAF1 33153 119 - 1
CCUUCACUUUGGAGGAACGCCAGCGUUUGUGUAUCCAUGGACUCAUGCCGGCCUGCGUG-CGAACCUACGAUGAGCAGAUGCUGGCCAUCGAGUCCAACUUUCACUCCUUCGAAUCGAAU
..(((..((((((((((((....)))..(((......(((((((((((((((((((...-((......))....))))..))))).))).))))))).....))))))))))))..))). ( -43.30)
>DroEre_CAF1 32510 119 - 1
CCUUCACAGUGGAGGAACGCCAGCGCCUGUGUAUCCAUGGACUCAUGCCGGCCUGCGUU-CGAACCUACGAUGAGCAGAUGCUGGCCAUCGAGUCCAACUUCCACUCCUUUGAAUCCAAU
..((((.(((((((((((((........)))).))).(((((((((((((((((((..(-((......)))...))))..))))).))).)))))))...))))))....))))...... ( -45.40)
>DroYak_CAF1 33980 119 - 1
CCUUCACAUUGGAGGAGCGCCAGCGUUUGUGCAUCCAUGGACUCAUGCCGGCCUGCGUU-CGAACUUACGAUGAGCAGAUGCUGGCCAUCGAGACCAACUUUCACUCCUUCGAAUCGAAU
..(((...(((((((((.((((((((((((.((((...((((.((.(....).)).)))-)(......))))).))))))))))))....((((.....)))).)))))))))...))). ( -41.30)
>consensus
CCUUCACAUUGGAGGAACGCCAGCGUUUGUGUAUCCAUGGACUCAUGCCGGCCUGCGUU_CGAACCUACGAUGAGCAGAUGCUGGCCAUCGAGUCCAACUUUCACUCCUUCGAAUCGAAU
(((((.....)))))...((((((((((((.((((...((....((((......))))......))...)))).))))))))))))..(((((...............)))))....... (-28.03 = -27.68 +  -0.35)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:16 2006