Locus 3581

Sequence ID 2R_DroMel_CAF1
Location 11,918,142 – 11,918,243
Length 101
Max. P 0.633767
window5834

overview

Window 4

Location 11,918,142 – 11,918,243
Length 101
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 76.02
Mean single sequence MFE -22.10
Consensus MFE -4.58
Energy contribution -5.78
Covariance contribution 1.20
Combinations/Pair 1.20
Mean z-score -1.66
Structure conservation index 0.21
SVM decision value 0.21
SVM RNA-class probability 0.633767
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11918142 101 - 20766785
CUAACUUAAC--CAUUAAAUGUUCAAGAGUGUAAUUUUG-----UG------------CUAAUGCAACGCAUAACAAUUACAUUGGCAAGCCAGAACAGUUAGAGUUUCUGGUUAAUAUU
.....(((((--((((((.(((((...((((((((((((-----((------------(.........)))))).)))))))))((....)).))))).))))......))))))).... ( -25.30)
>DroSec_CAF1 19815 106 - 1
CUAACUUAAC--CAUUAAAUGUUCAAGAGUGUAAUUCUGUUCUAUG------------CUAAUACAAAGCAUAAUAAUUACAUUGGCAAGCCAGAAUAGUUAGAGUUUCUGCUUAAUAAU
((((((....--........((((...(((((((((......((((------------((.......))))))..)))))))))((....)).))))))))))................. ( -17.40)
>DroSim_CAF1 17750 106 - 1
CUAACUUAAC--CAUUAAAUGUUCAAGAGUGUAAUUCUGUUCUAUG------------CUAAUACAAAGCAUAGUAAUUACAUUGGCAAGCCAGAAUGGUUAGAGUUUCUGCUUAAUAAU
..((((((((--((((...........(((((((((.....(((((------------((.......))))))).)))))))))((....))..))))))).)))))............. ( -25.60)
>DroEre_CAF1 16886 120 - 1
CUAACUGAUGCACAUUCAAUUUUCAAAGUGGCAAUUUUGUUCUAUGAAAGCAUUUAUAAUUACAUUGAGCAUAAUAAUUACAUUGGUAGGCCAGAAUUGUCCUCCUUUCUGCUUAAUAGU
......(((((...((((.....((((((....)))))).....)))).))))).........((((((((.((.....(((((((....))))...)))......)).))))))))... ( -19.40)
>DroYak_CAF1 18006 108 - 1
CUAACUUAUGCACAUUCAAUUUUCAAAAUGGUAAUUUCGUUCUAUG------------CUUCCACUAAGCAUAAUAAUUACAUUGGCAGGCCGGAAUAGUUCUUGUUUCGGCUUUGUAAU
........(((.((((..........))))((((((......((((------------(((.....)))))))..))))))....)))(((((((((((...)))))))))))....... ( -22.80)
>consensus
CUAACUUAAC__CAUUAAAUGUUCAAGAGUGUAAUUUUGUUCUAUG____________CUAAUACAAAGCAUAAUAAUUACAUUGGCAAGCCAGAAUAGUUAGAGUUUCUGCUUAAUAAU
...................(((((......((((((((((.((........................)).)))).))))))..(((....))))))))...................... ( -4.58 =  -5.78 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:06 2006