Locus 3580

Sequence ID 2R_DroMel_CAF1
Location 11,911,802 – 11,911,899
Length 97
Max. P 0.818354
window5833

overview

Window 3

Location 11,911,802 – 11,911,899
Length 97
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 81.10
Mean single sequence MFE -26.03
Consensus MFE -12.22
Energy contribution -12.38
Covariance contribution 0.16
Combinations/Pair 1.07
Mean z-score -2.42
Structure conservation index 0.47
SVM decision value 0.67
SVM RNA-class probability 0.818354
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11911802 97 - 20766785
CACAGC-GCGAAAGCGUUAAAAAAGCGAAUUGUAAAACAAGCAGCAAACAAACGAGCAACAUUCGCUCAUGGC--------UGGC----ACAACAGGACCCC-------CAUUUAGC
...(((-((....)))))......((...(((.....)))...))........((((.......))))((((.--------.((.----.(....)..)).)-------)))..... ( -22.80)
>DroPse_CAF1 18213 95 - 1
CACAGC-GCGAAAGCGUUAAAAAAGUGAAUUGUAAAACAAGCAGCAAACAAACGAGCAACAUUUGCUAAGGGC--------UG---CAUGCCCCAGAAUU---------CA-AUAGC
...(((-((....))))).......((((((.(....((.(((((.........((((.....))))....))--------))---).))....).))))---------))-..... ( -24.82)
>DroEre_CAF1 10654 104 - 1
CACAGC-GCGAAAGCGUUAAAAAAGCGAAUUGUAAAACAAGCAGCAAACAAACGAGCAACAUUCGCUCAGGGC--------UGGU----ACAACAGGACCCCCCGCCCUCAUUUAGC
...(((-((....)))))......((...(((.....)))...))........((((.......))))(((((--------((..----....))((.....)))))))........ ( -28.10)
>DroAna_CAF1 37575 107 - 1
CACAGC-GCGAAAGCGUUAAAAAAGCGAAUUGUAAAACAAGCAGCAAACAAACGAGCAACAUUUGCUCAGGGCCUGGUUGCUGGUGCCUGCCACAGGAUACC-------CC--CGGC
...(((-((....)))))......((...(((.....)))...))........(((((.....)))))...(((.((.....((((((((...)))).))))-------))--.))) ( -32.40)
>DroPer_CAF1 17310 96 - 1
CACAGCUGCGAAAGCGUUAAAAAAGUGAAUUGUAAAACAAGCAGCAAACAAACGAGCAACAUUUGCUAAGGGC--------UG---CAUGCCCCAGAAUU---------CA-AUAGC
....(((((....))..........((((((.(....((.(((((.........((((.....))))....))--------))---).))....).))))---------))-..))) ( -22.02)
>consensus
CACAGC_GCGAAAGCGUUAAAAAAGCGAAUUGUAAAACAAGCAGCAAACAAACGAGCAACAUUUGCUCAGGGC________UGG__C_UGCCACAGGAUCCC_______CA_AUAGC
...(((.((....)))))......((...(((.....)))...))........((((.......))))................................................. (-12.22 = -12.38 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:05 2006