| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,911,631 – 11,911,734 |
| Length | 103 |
| Max. P | 0.981743 |
| Location | 11,911,631 – 11,911,734 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 78.54 |
| Mean single sequence MFE | -33.08 |
| Consensus MFE | -21.46 |
| Energy contribution | -21.70 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.88 |
| Structure conservation index | 0.65 |
| SVM decision value | 1.90 |
| SVM RNA-class probability | 0.981743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11911631 103 - 20766785 AAAG------------UUGGUUAAUAGAAAAUGUAAUUCGAUGCAUUUAAUGUUGGCAACGGUUGCUGAAUGGAAAUCAGUCUAUGGCAACUGGUCGGUGAGUUUCCC--CAACUUA .(((------------((((((((((..(((((((......)))))))..)))))))..((((((((..(((((......)))))))))))))...............--)))))). ( -30.30) >DroSec_CAF1 13463 103 - 1 AAAG------------UUGGUUAAUAGAAAAUGUAAUUCGAUGCAUUUAAUGUUGGCAACGGUUGCUGAAUGGAAAUCAGUCUAUGGCAACUGGUCGGGGAGUUUGCU--CAACUUG .(((------------((((((((((..(((((((......)))))))..)))))))..((((((((..(((((......)))))))))))))...............--)))))). ( -30.10) >DroSim_CAF1 10485 103 - 1 AAAG------------UUGGUUAAUAGAAAAUGUAAUUCGAUGCAUUUAAUGUUGGCAACGGUUGCUGAAUGGAAAUCAGUCUAUGGCAACUGGUCGGGGAGUUUCCC--CAACUUG .(((------------((.(((((((..(((((((......)))))))..)))))))..((((((((..(((((......)))))))))))))...((((.....)))--)))))). ( -35.10) >DroEre_CAF1 10490 102 - 1 AAAG------------UUGGUUAAUAGAAAAUGUAAUUCGAUGCAUUUAAUGUUGGCAACGGUUGCUGAAUGGAAAUCAUUCUAUGGCAACUGGUCGGGGAAA-UCCC--CAACUUA .(((------------((.(((((((..(((((((......)))))))..)))))))..(((((((((((((.....)))))...))))))))...((((...-.)))--)))))). ( -35.80) >DroAna_CAF1 37349 114 - 1 AAACUUAGCUCU-UCUUUGGUUAAUAGAAAAUGUAAUUCGAUGCAUUUAAUGUUGGCAACGGUUGCUGAAUGGAAAUCAGACUAUGGCAACCAGCCGGUUAGGUCCUC--CCACCGA .......(((..-......(((((((..(((((((......)))))))..)))))))...(((((((..((((........))))))))))))))((((..((....)--).)))). ( -29.80) >DroPer_CAF1 17074 109 - 1 CAAAGUAGCUCCCGCUCUGGUUAAUAGAAAAUGUAAUUCGAUGCAUUUAAUGUUGGCAGGAAUUGUUGAGCGG--------CUGUUGCAGGGGGGCGGGGCGCGGGCUAGCAACCAG ....(((((..((((((..(((((((..(((((((......)))))))..)))))))..........))))))--------..)))))..((..((..(((....))).))..)).. ( -37.40) >consensus AAAG____________UUGGUUAAUAGAAAAUGUAAUUCGAUGCAUUUAAUGUUGGCAACGGUUGCUGAAUGGAAAUCAGUCUAUGGCAACUGGUCGGGGAGUUUCCC__CAACUUA ...................(((((((..(((((((......)))))))..)))))))..((((((((..(((((......)))))))))))))........................ (-21.46 = -21.70 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:04 2006