Locus 357

Sequence ID 2R_DroMel_CAF1
Location 2,334,714 – 2,334,818
Length 104
Max. P 0.822576
window706

overview

Window 6

Location 2,334,714 – 2,334,818
Length 104
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 95.51
Mean single sequence MFE -27.77
Consensus MFE -26.15
Energy contribution -26.90
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.73
Structure conservation index 0.94
SVM decision value 0.69
SVM RNA-class probability 0.822576
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2334714 104 + 20766785
UAUUUGUGCGAACAAUGAUGGUCGCAAUUCGAUUAUUCAACCAGUUGCACGGCUUCAGCUCGAAUUAAUCUCUAACCCGGACAUCCUUGGGUUCGUGAUUAAAU
.....((((((....(((((((((.....)))))).))).....))))))(((....)))....((((((.(.(((((((......))))))).).)))))).. ( -27.90)
>DroSec_CAF1 107166 104 + 1
UAUUUGUGCGAACAAUGAUGGUCGCAAUUCGAUUAUUCCACCAGUUGCACGGCUUCAGCUCGAAUUAAUCUCCAACCCGGACAUCCUUGGGUUCGUGAUUAAAU
.....((((((.....((((((((.....)))))))).......))))))(((....)))....((((((.(.(((((((......))))))).).)))))).. ( -27.70)
>DroEre_CAF1 98881 103 + 1
UG-UUGUGCGCACAAUGAUGGUCGCAAUUCGAUUAUUCCACCAGUUGCACGGCUUCAGCUCGAAUUAAUCUCUAACCCGGACAUCCUUGGGUCCGUGAUUAAAU
.(-(((((((.((...((((((((.....))))))))......))))))))))...........((((((.(..((((((......))))))..).)))))).. ( -26.50)
>DroYak_CAF1 95449 104 + 1
UAUUUGUGCGAACAAUGAUGGUCGCAAUUCGAUUAUUCCACCAGUUGCACGGCUUCAGCUAAAAUUAAUCUCUAACCCGGGCAUCCUUGGGUCCGUGAUUAAAU
.....((((((.....((((((((.....)))))))).......))))))(((....)))....((((((.(..(((((((....)))))))..).)))))).. ( -29.00)
>consensus
UAUUUGUGCGAACAAUGAUGGUCGCAAUUCGAUUAUUCCACCAGUUGCACGGCUUCAGCUCGAAUUAAUCUCUAACCCGGACAUCCUUGGGUCCGUGAUUAAAU
.....((((((.....((((((((.....)))))))).......))))))(((....)))....((((((.(.(((((((......))))))).).)))))).. (-26.15 = -26.90 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:18 2006