Locus 3565

Sequence ID 2R_DroMel_CAF1
Location 11,882,998 – 11,883,101
Length 103
Max. P 0.991102
window5805

overview

Window 5

Location 11,882,998 – 11,883,101
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 97.77
Mean single sequence MFE -35.80
Consensus MFE -32.32
Energy contribution -33.12
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -2.06
Structure conservation index 0.90
SVM decision value 2.25
SVM RNA-class probability 0.991102
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11882998 103 + 20766785
UGGCAAGGAUCGCUGGCUGUCAUGGGUAAUGAAUGCGCUGGCAAACAAUUAUUUUUAUAUGACUGCUGGCUGCGACAGCCGCCUGUCUCUUUGCCGCUCUUCU
.((((((((..((..((.((((((((((((...(((....)))....))))))....)))))).))..))...(((((....)))))))))))))........ ( -37.50)
>DroSec_CAF1 23427 103 + 1
UGGCAAGGAUCGCUGACUGUCAUGGGUAAUGAAUGCGCUGGCAAACAAUUAUUUUUAUAUGACUGCUGACUGCGACAGGCGGCUGUCUCUUUGCCGCUCUUCU
.((((((((..((((.(((((..(((((((...(((....)))....)))))))..........((.....))))))).))))....))))))))........ ( -31.00)
>DroSim_CAF1 23610 103 + 1
UGGCAAGGAUCGCUGGCUGUCAUGGGUAAUGAAUGCGCUGGCAAACAAUUAUUUUUAUAUGACUGCUGGCUGCGACAGGCGGCUGUCUCUUUGCCGCUCUUCU
.((((((((..((..((.((((((((((((...(((....)))....))))))....)))))).))..))...(((((....)))))))))))))........ ( -38.20)
>DroEre_CAF1 25538 103 + 1
UGGCAAGGAUCGCUGGCUGUCAUGGGUAAUGAAUGCGCUGGCAAACAAUUAUUUUUAUAUGACUGCUGUCUGCGACAGGCGGCUGUCUCUUUGGCGCUCUUCU
.(.((((((..((..((..((((.....))))....))..))..................(((.((((((((...)))))))).))))))))).)........ ( -34.10)
>DroYak_CAF1 23624 103 + 1
UGGCAAGGAUCGCUGGCUGUCAUGGGUAAUGAAUGCGCUGGCAAACAAUUAUUUUUAUAUGACUGCUGGCUGCGACAGGCGGCUGUCUCUUUGCCGCUCUUCU
.((((((((..((..((.((((((((((((...(((....)))....))))))....)))))).))..))...(((((....)))))))))))))........ ( -38.20)
>consensus
UGGCAAGGAUCGCUGGCUGUCAUGGGUAAUGAAUGCGCUGGCAAACAAUUAUUUUUAUAUGACUGCUGGCUGCGACAGGCGGCUGUCUCUUUGCCGCUCUUCU
.((((((((..((((((.((((((((((((...(((....)))....))))))....)))))).))))))...(((((....)))))))))))))........ (-32.32 = -33.12 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:39 2006