| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,871,861 – 11,871,968 |
| Length | 107 |
| Max. P | 0.861793 |
| Location | 11,871,861 – 11,871,968 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.05 |
| Mean single sequence MFE | -29.07 |
| Consensus MFE | -18.47 |
| Energy contribution | -18.63 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.861793 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11871861 107 + 20766785 -CC---CCGCAACCGAAGGGGAAGUUGCGUUUUCCGG--GGCAAAACUUUGGCAAAGUGAAAAACUUGCUGUCAGCAUUAGAUAAGCGCCACAAGUUAAUAGACUUGUAAAAC------- -((---(((...((....))((((......)))))))--)).........(((.((((.....))))((((((.......))).))))))(((((((....))))))).....------- ( -30.10) >DroPse_CAF1 10141 99 + 1 ------------------AGGAAGUGGCGUUUCCU-G--UGCUAAACUUUGGCCAAGUGAAAAACUUGCUGUCAGCAUAAGAUAAGCGCCAGAAGUUAAUAGACUUGUAGAGCAGACGCA ------------------........((((((.((-.--(((......(((((.((((.....))))((((((.......))).))))))))(((((....)))))))).)).)))))). ( -26.80) >DroEre_CAF1 14433 102 + 1 -GC---CCGC------AGAGGAAGUUGCGUUUUCCGG-GGGCAGAACUUUGGCAAAGUGAAAAACUUGCUGUCAGCAUUAGAUAAGCGCCACAAGUUAAUAGACUUGUAAAAC------- -((---((.(------...(((((......))))).)-))))........(((.((((.....))))((((((.......))).))))))(((((((....))))))).....------- ( -30.90) >DroYak_CAF1 12310 104 + 1 CCC---CAGC------AGCGGAAGUUGCGUUUUCCGGGGGGCAAAACUUUGGCAAAGUGAAAAACUUGCUGUCAGCAUUAGAUAAGCGCCACAAGUUAAUAGACUUGUAAAAC------- (((---(.((------(((....)))))(.....)))))(((.......(((((((((.....))))..)))))((.........)))))(((((((....))))))).....------- ( -34.40) >DroAna_CAF1 11044 109 + 1 CGUUAUCAAAAAGUAAAAAGGAAGUUGCGUUUUCCG----GCCGAACUUUGGCAAAGUGAAAAACUUGCUGUCAGCAGUAGAUAAGCGCCACAAGUUAAUAGACUUGUAAAAC------- (((((((...((((.....(((((......))))).----(((((...)))))..........))))((((....)))).))).))))..(((((((....))))))).....------- ( -25.40) >DroPer_CAF1 11817 99 + 1 ------------------AGGAAGUGGCGUUUCCU-G--UGCUAAACUUUGGCCAAGUGAAAAACUUGCUGUCAGCAUAAGAUAAGCGCCAGAAGUUAAUAGACUUGUAGAGCAGACGCA ------------------........((((((.((-.--(((......(((((.((((.....))))((((((.......))).))))))))(((((....)))))))).)).)))))). ( -26.80) >consensus __C___C_GC______AGAGGAAGUUGCGUUUUCCGG__GGCAAAACUUUGGCAAAGUGAAAAACUUGCUGUCAGCAUUAGAUAAGCGCCACAAGUUAAUAGACUUGUAAAAC_______ ....................((((((((............)))..)))))(((.((((.....))))((((((.......))).))))))(((((((....)))))))............ (-18.47 = -18.63 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:23 2006