Locus 355

Sequence ID 2R_DroMel_CAF1
Location 2,330,116 – 2,330,216
Length 100
Max. P 0.870177
window704

overview

Window 4

Location 2,330,116 – 2,330,216
Length 100
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 73.83
Mean single sequence MFE -23.74
Consensus MFE -9.13
Energy contribution -9.53
Covariance contribution 0.40
Combinations/Pair 1.29
Mean z-score -1.97
Structure conservation index 0.38
SVM decision value 0.87
SVM RNA-class probability 0.870177
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2330116 100 + 20766785
CGAAGGAUUGGGAAAAA-AGGAUGCU--CAG----UUCAAAAUC-AU--UUGCUUGUAUCCUUUGCUAUCUACAAUACAUUUAGAUAGUGUGUAGAAAAUGUCCAUUUAA
....((((..((...((-(((((((.--.((----(........-..--..))).))))))))).)).((((((.(((.........)))))))))....))))...... ( -22.70)
>DroSec_CAF1 102510 96 + 1
CGAAGGAUUGGAAAAAAAGGGAUGCU--GAG----UUCAAAAUC-AU--UUGCUUGUAUCCUUUGCUAUCUA-----CAUUUAGAUAAUGUGUGGAAAAUGUCCAUUUGA
(((((((((((.....(((((((((.--(((----(........-..--..))))))))))))).)))((((-----(((.........)))))))....)))).)))). ( -23.90)
>DroSim_CAF1 97550 96 + 1
CGAAGGAUUGGAAAAAAAAGGAUGCU--GAG----UUCAAAAUC-AU--UUGCUUGUAUCCUUUGCUAUCUA-----CAUUUAGAUAGUGUGUGGAAAAUGUCCAUUUAA
.....((.((((....(((((((((.--(((----(........-..--..)))))))))))))((((((((-----....))))))))............)))).)).. ( -24.50)
>DroEre_CAF1 94462 100 + 1
UAAAGGAUUGAAAAGGA-GUGGUGCAAGGAC----UCUAAAAUCUACUGUCGCUUGUGUCCUUCGCUAUCUA-----CGCUUAGAUAGUGUGCGUGAAUUGGCCAUUUAA
....((.(..(...(((-(.((..(((((((----..((.....))..))).))))..))))))((((((((-----....)))))))).........)..)))...... ( -26.50)
>DroYak_CAF1 90898 95 + 1
UGAAAAAUUGAAAGAAA-AUGGAGCAAGGAAAUGGUUUCAAAUAUACUGCCGCUUGUUUCCUUUGCUAUCUA-----CAUUUAGAUA---------AAUUGUCCAUUUAA
...............((-((((((((((((((((((............)))....)))))).))))((((((-----....))))))---------.....))))))).. ( -21.10)
>consensus
CGAAGGAUUGGAAAAAA_AGGAUGCU__GAG____UUCAAAAUC_AU__UUGCUUGUAUCCUUUGCUAUCUA_____CAUUUAGAUAGUGUGUGGAAAAUGUCCAUUUAA
.....((.((((......(((((((..............................)))))))..((((((((.........))))))))............)))).)).. ( -9.13 =  -9.53 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:16 2006