Locus 3548

Sequence ID 2R_DroMel_CAF1
Location 11,859,929 – 11,860,019
Length 90
Max. P 0.882883
window5775

overview

Window 5

Location 11,859,929 – 11,860,019
Length 90
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 69.14
Mean single sequence MFE -32.63
Consensus MFE -12.80
Energy contribution -13.24
Covariance contribution 0.45
Combinations/Pair 1.43
Mean z-score -2.00
Structure conservation index 0.39
SVM decision value 0.92
SVM RNA-class probability 0.882883
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11859929 90 + 20766785
ACUCUGACUGCAGCUCCGUCGGCCAUAGCCUC---CACGCAGGGAGCUGCACCGGCCCCAACUUUAAGUACUGGUGGUGCUUUUGCCAAUCUC
........(((((((((...(((....)))..---(.....))))))))))..(((.........((((((.....))))))..)))...... ( -27.20)
>DroSec_CAF1 484 90 + 1
ACUCUGACUGCAGCUCCGGCGGCCAUAGCGCC---GACGCAAGGAGCUGCACCGGCCCCAACUUUAAGUACUGGCGGUGCUUUUGCCAAUCUC
........(((((((((((((.......))))---).(....)))))))))..(((.........((((((.....))))))..)))...... ( -31.70)
>DroEre_CAF1 475 90 + 1
ACUCUGACAGCAGCUCCGGCGGCCAUAGCUCC---CACCCUGGGAGCUGCACCUGCCCCAACCUUAAGUACUGGCGGUGCUUUUGCCAAUCUC
...(((....)))....(((((....((((((---(.....)))))))(((((.(((...((.....))...))))))))..)))))...... ( -32.20)
>DroYak_CAF1 484 90 + 1
ACUCUGACAACAGCUCCGGCGGCCAUUGCUCC---CACCCUAGGAGCUGCACCUGCCGCAACCUUAAGUACUGGCGGGGCUUUUGCCAAUCUC
....((.(((.((((((((((((....(((((---.......))))).......)))))..((.........))))))))).))).))..... ( -32.00)
>DroAna_CAF1 472 93 + 1
AGUUUGACGGCAGCUCCUACGGCUGUUGCUCCACAGACUGCGGCAGCCGCGGCAGUGCCCACUCUGAGCACUGGAGGUGCCUUUGCUAAUCUA
(((..((.((((.((((..((((((((((..........))))))))))..)((((((.(.....).))))))))).)))))).)))...... ( -40.40)
>DroPer_CAF1 456 73 + 1
--------AGCCGCUGUU------GUGGCUCCUCUCACUGGAGUGGU------GGCGCCUGCUGUAGGCACCGGCGGGGCAUUUGCCAAUUUA
--------..(((((((.------.(.(((((.......))))).).------.))(((((...)))))...)))))(((....)))...... ( -32.30)
>consensus
ACUCUGACAGCAGCUCCGGCGGCCAUAGCUCC___CACCCAAGGAGCUGCACCGGCCCCAACUUUAAGUACUGGCGGUGCUUUUGCCAAUCUC
.........((((((((.........................)))))))).....................((((((.....))))))..... (-12.80 = -13.24 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:10 2006