Locus 3545

Sequence ID 2R_DroMel_CAF1
Location 11,847,313 – 11,847,405
Length 92
Max. P 0.520984
window5772

overview

Window 2

Location 11,847,313 – 11,847,405
Length 92
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 80.84
Mean single sequence MFE -13.04
Consensus MFE -8.70
Energy contribution -8.23
Covariance contribution -0.47
Combinations/Pair 1.45
Mean z-score -1.32
Structure conservation index 0.67
SVM decision value -0.02
SVM RNA-class probability 0.520984
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11847313 92 - 20766785
AGCCGAAGCCCUUCGGCGCUAC--AUAU----AUUUGGUUCGAGUUUCUAGUUUCUAGGCCUUUUUAAUUUUUUCGUUCUCUAACAUUUAUUUUCCUU
.((((((....)))))).....--....----.....(((.(((..(((((...)))))...................))).)))............. ( -13.10)
>DroPse_CAF1 11185 93 - 1
AGCUUAAACCUUGAGGUUCUAUCUAUUUAUCUAAUUCGUUAGAGUUCGU--UCUAUAUGAUAU-UCUGUUUUUUUGUUUUUCAACAUUU--UAUCAUU
......((((....))))...........(((((....)))))......--.....((((((.-..((((............))))...--)))))). (  -8.40)
>DroSec_CAF1 9403 91 - 1
AGCCGAAGCCCUUCGGCCCUAC--AUUU----AUUUGGUUCGAGUUUCUAGUUUCUAGGCCUU-UUACUUUUUUCGUUCCCUAACAUUUAUUUUCCUU
.((((((....)))))).....--....----....((..((((.....(((...........-..)))...))))..)).................. ( -14.02)
>DroSim_CAF1 10053 91 - 1
AGCCGAAGCCCUUCGGCCCUAC--AUUU----AUUUGGUUCGAGUUUCUAGUUUCUAGGCCUU-UUACUUUUUUCGUUCCCUAACAUUUAUUUUCCUU
.((((((....)))))).....--....----....((..((((.....(((...........-..)))...))))..)).................. ( -14.02)
>DroEre_CAF1 10025 88 - 1
AGCCGAAACACUUCGGCCCUAC--AUUU----AUUUGGUUCGAGU-UCUAGUUUCUAGGCCUU-UUACUUU-UUCGUUCCCUAACAU-UAUUUUCCUU
.((((((....)))))).....--....----....(((..(((.-.((((...))))..)))-..)))..-...............-.......... ( -15.20)
>DroYak_CAF1 11126 90 - 1
AGCCGAAACACUUCGGCCCUAC--AUUU----AUUUGGUUCGAGUUUCUAGUUUCUAGGCCUU-UAACUUUAUUCUUUACCUAACAU-UAUUUUCCUU
.((((((....)))))).....--....----....(((..((((....((((..........-.))))..))))...)))......-.......... ( -13.50)
>consensus
AGCCGAAACCCUUCGGCCCUAC__AUUU____AUUUGGUUCGAGUUUCUAGUUUCUAGGCCUU_UUACUUUUUUCGUUCCCUAACAUUUAUUUUCCUU
.((((((....)))))).............................(((((...)))))....................................... ( -8.70 =  -8.23 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:07 2006