Locus 3543

Sequence ID 2R_DroMel_CAF1
Location 11,841,171 – 11,841,270
Length 99
Max. P 0.836969
window5770

overview

Window 0

Location 11,841,171 – 11,841,270
Length 99
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 76.51
Mean single sequence MFE -32.88
Consensus MFE -25.61
Energy contribution -24.28
Covariance contribution -1.33
Combinations/Pair 1.39
Mean z-score -1.14
Structure conservation index 0.78
SVM decision value 0.74
SVM RNA-class probability 0.836969
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11841171 99 - 20766785
GGUGAACUUCAGCGAGGCCUUCUGCGCCCUCAUCCACGUCAAGGCGCUGCGCGUGUUUGUGGAAUCCGUGCUGAGGUAUAUCACCA-AGU-UAUUGCCAUA----
(((((((((((((((((.(......).)))).((((((..((.((((...)))).))))))))......))))))))...))))).-...-..........---- ( -37.00)
>DroVir_CAF1 5760 89 - 1
GGUGAACUUCAGCGAGGCCUUCUGCGCCUUGAUACAUGUCAAAGCGCUGCGCGUUUUUGUGGAAUCCGUGCUGAGGUAGGCAAC------GCAU-C---------
((((.(((((((((.((..(((.((((.(((((....))))).))))..((((....))))))).)).))))))))).(....)------.)))-)--------- ( -32.10)
>DroGri_CAF1 5723 91 - 1
GGUGAACUUCAGCGAGGCUUUCUGCGCCUUGAUACACGUGAAAGCGUUGCGCGUGUUUGUGGAAUCCGUGCUGAGGUGCGUCCUCA----UCAU-C---------
((((((((((((((.((..(((..((....(((((.((..(.....)..)).)))))))..))).)).)))))))))......)))----))..-.--------- ( -31.90)
>DroEre_CAF1 3875 99 - 1
GGUGAACUUUAGCGAGGCCUUCUGUGCCCUCAUCCAUGUCAAGGCGCUGCGCGUGUUUGUGGAAUCCGUGCUGAGGUACACUAUCG-UAU-UGUGACCACC----
((((.((((((((((((.(......).)))).((((((..((.((((...)))).))))))))......)))))))).(((.....-...-.)))..))))---- ( -31.80)
>DroYak_CAF1 5111 100 - 1
GGUGAACUUCAGCGAGGCCUUCUGCGCCCUCAUCCACGUCAAGGCGCUGCGCGUGUUUGUGGAGUCCGUGCUGAGGUAGACUGUUUUUUU-UGUAACUGCC----
(((..((((((((((((.(......).)))).((((((..((.((((...)))).))))))))......))))))))..)))........-..........---- ( -31.90)
>DroMoj_CAF1 5961 98 - 1
GGUGAACUUCAGCGAGGCUUUCUGCGCCUUGAUACACGUCAAAGCGCUGCGCGUUUUCGUGGAAUCUGUGCUGAGGUAUACAUU------GAAU-UUUACAGAGG
.(((.(((((((((((((.......)))))(((.((((..(((((((...)))))))))))..)))...)))))))).)))...------....-.......... ( -32.60)
>consensus
GGUGAACUUCAGCGAGGCCUUCUGCGCCCUCAUACACGUCAAAGCGCUGCGCGUGUUUGUGGAAUCCGUGCUGAGGUACACAAUC______UAU_AC_AC_____
((((.(((((((((.((..(((.((((.((...........))))))..((((....))))))).)).))))))))).))))....................... (-25.61 = -24.28 +  -1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:05 2006