| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,814,802 – 11,814,895 |
| Length | 93 |
| Max. P | 0.860653 |
| Location | 11,814,802 – 11,814,895 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 78.42 |
| Mean single sequence MFE | -23.00 |
| Consensus MFE | -12.46 |
| Energy contribution | -13.02 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.860653 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11814802 93 - 20766785 ------CUAGAAAAACAAGUAGC------CGACAG---AGAGUCG-GGCAA-AAGGUAAAUCGAAGCC-GAGAUUAAUAGCGAUAAGGCUAUUGAUUAGCAUUUUAGCCAC ------((((((..........(------((((..---...))))-)((..-..(((........)))-..((((((((((......)))))))))).)).)))))).... ( -25.50) >DroPse_CAF1 5058 83 - 1 ------CCCGGAAAACAAGUAGC------CG---------------GGCAAAAAGGUAAAUCGAAGCC-GAGAUUAAUAGCGAUAAGGCUAUUGAUUAGCAUUUUAGCCAC ------(((((...........)------))---------------))......(((...(((....)-))((((((((((......)))))))))).........))).. ( -22.50) >DroGri_CAF1 18287 89 - 1 -----CACUACAAAACGAGUAGC------A---------AAGUUGCUGCCA-AAGGUAAAUCGAAGCCCGAGAUUAAUAGCGAUAA-GCUAUUGAUUAGCAAUGCAGCCAC -----..((((.......)))).------.---------..((.(((((..-..(((........)))...((((((((((.....-))))))))))......))))).)) ( -22.90) >DroWil_CAF1 6445 101 - 1 AAUGGAGCAGCAAAACGAGUAGCUUUAGCCGCC-------ACUUG-GCAAA-AAGGUAAAUCGAAGCC-GAGAUUAAUAGCGAUAAGGCUAUUGAUUAGCAUUUUAGCCAC ..((((((.((.......)).))))))...(((-------....)-))...-..(((...(((....)-))((((((((((......)))))))))).........))).. ( -25.90) >DroAna_CAF1 5041 96 - 1 -------CCGGAAAACAAGUAGC------CGACAGCGGAGAACCG-GGUAAAAAGGUAAAUCGAAGCC-GAGAUUAAUAGCGAUAAGACUAUUGAUUAGCAUUUUAGCCAC -------((((........(..(------((....)))..).)))-).......(((...(((....)-))((((((((((.....).))))))))).........))).. ( -18.70) >DroPer_CAF1 5790 83 - 1 ------CCCGGAAAACAAGUAGC------CG---------------GGCAAAAAGGUAAAUCGAAGCC-GAGAUUAAUAGCGAUAAGGCUAUUGAUUAGCAUUUUAGCCAC ------(((((...........)------))---------------))......(((...(((....)-))((((((((((......)))))))))).........))).. ( -22.50) >consensus ______CCCGGAAAACAAGUAGC______CG_________A_U_G_GGCAA_AAGGUAAAUCGAAGCC_GAGAUUAAUAGCGAUAAGGCUAUUGAUUAGCAUUUUAGCCAC ..............................................(((.....(((........)))...((((((((((......)))))))))).........))).. (-12.46 = -13.02 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:44 2006