Locus 3527

Sequence ID 2R_DroMel_CAF1
Location 11,801,262 – 11,801,382
Length 120
Max. P 0.509846
window5741

overview

Window 1

Location 11,801,262 – 11,801,382
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.33
Mean single sequence MFE -30.90
Consensus MFE -29.28
Energy contribution -29.28
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 0.95
SVM decision value -0.05
SVM RNA-class probability 0.509846
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11801262 120 - 20766785
ACGAUUCCAUUGAUCAUAUCUCCAAUGGCAUCCAUGUCGGGAGUAAAGACAAUCCGACCAUCUUUCACAUCCGAUUCGACGACAAUAAUGGGAGCGGAUGCCAUAUCCGCAUCGCAAUGA
..(((.((((((..........)))))).)))((((((((..(((((((...........))))).))..))))).............((.(((((((((...))))))).)).))))). ( -30.30)
>DroSec_CAF1 5396 120 - 1
ACAAUUCCAUUGAUCAUAUCGCCAAUGGCAUCCAUGUCGGGAGUAAAGACAAUCCGACCAUCUUUCACAUCCGAUUCGACGACAAUAAUGGGAGCGGAUGCCAUAUCCGCAUCGCAAUGA
.......(((((.......((...(((((((((..((((((.((....))..))))))...........(((.(((..........))).)))..)))))))))...)).....))))). ( -30.30)
>DroSim_CAF1 5392 120 - 1
ACAAUUCCAUUGAUCAUAUCGCCAAUGGCAUCCAUGUCGGGAGUAAAGACAAUCCGACCAUCUUUCACAUCCGAUUCGACGACAACAAUGGGAGCGGAUGCCAUAUCCGCAUCGCAAUGA
....((((((((........(((...))).((...(((((..(((((((...........))))).))..)))))..))......))))))))(((((((...))))))).......... ( -32.10)
>consensus
ACAAUUCCAUUGAUCAUAUCGCCAAUGGCAUCCAUGUCGGGAGUAAAGACAAUCCGACCAUCUUUCACAUCCGAUUCGACGACAAUAAUGGGAGCGGAUGCCAUAUCCGCAUCGCAAUGA
.......(((((............(((((((((..((((((.((....))..))))))...........(((.(((..........))).)))..)))))))))..........))))). (-29.28 = -29.28 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:39 2006