| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,800,503 – 11,800,623 |
| Length | 120 |
| Max. P | 0.611643 |
| Location | 11,800,503 – 11,800,623 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.22 |
| Mean single sequence MFE | -36.10 |
| Consensus MFE | -35.14 |
| Energy contribution | -34.70 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.611643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11800503 120 - 20766785 CAUUGUGCUGGGAAUGGCGAAGCCCAUUCGCUCAAAAUGCUGGGCUUGCUCACACAGUUCCAGAACGGAGGCAUCGAUAUUGCACUCCAAAAGUCCCUUGAAUUUCUUACUUCGCACGAC ..((((((.((((..(((.(((((((...((.......))))))))))))......(((....)))(((((((.......))).)))).....))))..(((........))))))))). ( -38.10) >DroSec_CAF1 4643 120 - 1 CAUUGUGCUGGGAAUGGCGAAGCCCAUUCGCUCAAAAUGCUGGGCUUGCUUACACAGUUCCAGAACGGAGGCAUCGAUAUUGCACUCCAAGAGUCCCUUGAAUUUCUUACUUCGUACCAC ....((.((((((..(((.(((((((...((.......)))))))))))).......)))))).))(((((((.......))).))))(((((..........)))))............ ( -34.40) >DroSim_CAF1 4639 120 - 1 CAUUGUGCUGGGAAUGGCGAAGCCCAUUCGCUCAAAAUGCUGGGCCUGCUCACACAGUUCCAGAACGGAGGCAUCGAUAUUGCACUCCAAGAGUCCCUUGAAUUUCUUACUUCGUACCAC ....((((.((((.(((((((.....))))).)).....((((..(((......)))..))))...(((((((.......))).)))).....))))..(((........)))))))... ( -35.80) >consensus CAUUGUGCUGGGAAUGGCGAAGCCCAUUCGCUCAAAAUGCUGGGCUUGCUCACACAGUUCCAGAACGGAGGCAUCGAUAUUGCACUCCAAGAGUCCCUUGAAUUUCUUACUUCGUACCAC ....((((.((((.(((((((.....))))).)).....((((..(((......)))..))))...(((((((.......))).)))).....))))..(((........)))))))... (-35.14 = -34.70 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:36 2006