| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,799,544 – 11,799,664 |
| Length | 120 |
| Max. P | 0.849468 |
| Location | 11,799,544 – 11,799,664 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.08 |
| Mean single sequence MFE | -33.97 |
| Consensus MFE | -32.72 |
| Energy contribution | -33.17 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.849468 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11799544 120 - 20766785 AGCACUCAAUAGCCACGUUGCAUAUCCUAAUGCCGAAACGCGGUUUGCCCGAGAGGAUCUCCUCCACUUUGGUUUGCUUUGUGCAGAAUCUGUAAGGAGCAAUAAUGUUGUAUAUAUUAU .(((......((((.((((((((......))))...)))).)))))))((((((((....))))....)))).((((((..(((((...)))))..))))))((((((.....)))))). ( -31.40) >DroSec_CAF1 3687 117 - 1 AGCACUCGAUAGCCACGUUGCAUAUCCUAAUGCCGAAACGUGGUUUGCCCGAGAGGAUCUCCUCCACUUUGGUUUGCUCUGUGCAGAAUCUGUAAGGAGCAAUAAU---GUAUAUAUUAU .(((......(((((((((((((......))))...))))))))))))((((((((....))))....)))).(((((((.(((((...))))).)))))))....---........... ( -36.00) >DroSim_CAF1 3682 117 - 1 AGCACUCAAUAGCCACGUUGCAAAUCCUAAUGCCGAAACGUGGUUUGCCCGAGAGGAUCUCCUCCACUUUGGUUUGCUCUGUGCAGAAUCUGUAAGGAGCAAUAAU---GUAUAUAUUAU .(((......((((((((((((........)))...))))))))))))((((((((....))))....)))).(((((((.(((((...))))).)))))))....---........... ( -34.50) >consensus AGCACUCAAUAGCCACGUUGCAUAUCCUAAUGCCGAAACGUGGUUUGCCCGAGAGGAUCUCCUCCACUUUGGUUUGCUCUGUGCAGAAUCUGUAAGGAGCAAUAAU___GUAUAUAUUAU .(((......(((((((((((((......))))...))))))))))))((((((((....))))....)))).((((((..(((((...)))))..)))))).................. (-32.72 = -33.17 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:35 2006