Locus 3522

Sequence ID 2R_DroMel_CAF1
Location 11,798,215 – 11,798,335
Length 120
Max. P 0.500000
window5735

overview

Window 5

Location 11,798,215 – 11,798,335
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 91.67
Mean single sequence MFE -30.86
Consensus MFE -28.50
Energy contribution -28.72
Covariance contribution 0.23
Combinations/Pair 1.06
Mean z-score -1.45
Structure conservation index 0.92
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11798215 120 - 20766785
GUUAGAUGCUCAUCUUCUACAGCGCUGGAGGAGGCCAUUUCACCGAGUUUUUACUCACCAAAAUUACAGAAAACUUAACAAAAAUCCAUGGCAACCGGAAGCCGGCCUUUCCGUUACUUU
((.((((....))))...))......((((.(((((........((((....)))).................................(((........))))))))))))........ ( -25.60)
>DroSec_CAF1 2327 120 - 1
GUUAGAUGCUCAUCUUCUACAGCGCUGGAGGAGGCCAUUUCACGGAGUUUUCACUCACCAAACGUAUAGAAAACUUUAUGAAAAUCCAUGGCAACCGGAAGCCGGCCUUACCGUUACUUU
((.((((....))))...))......((..((((((.(((((..((((((((................))))))))..)))))......(((........))))))))).))........ ( -32.49)
>DroSim_CAF1 2335 119 - 1
GUUAGAUGCUCAUCUUCUACAGCGCUGGAGGAGGCCAUUUCACGAAGUUUUCAUUCGC-AAAAGUACAGAAAACUUUAUGAAAAUCCAUGGCAACCGGAAGCCGGCCAUAUCGUUACUUU
((..((((....(((((((......)))))))((((.(((((..((((((((....((-....))...))))))))..)))))......(((........))))))).))))...))... ( -34.50)
>consensus
GUUAGAUGCUCAUCUUCUACAGCGCUGGAGGAGGCCAUUUCACGGAGUUUUCACUCACCAAAAGUACAGAAAACUUUAUGAAAAUCCAUGGCAACCGGAAGCCGGCCUUACCGUUACUUU
....((((....(((((((......)))))))((((.(((((..((((((((................))))))))..)))))......(((........)))))))....))))..... (-28.50 = -28.72 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:33 2006