Locus 352

Sequence ID 2R_DroMel_CAF1
Location 2,309,064 – 2,309,165
Length 101
Max. P 0.563781
window701

overview

Window 1

Location 2,309,064 – 2,309,165
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 87.03
Mean single sequence MFE -23.12
Consensus MFE -18.32
Energy contribution -19.36
Covariance contribution 1.04
Combinations/Pair 1.05
Mean z-score -1.50
Structure conservation index 0.79
SVM decision value 0.06
SVM RNA-class probability 0.563781
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2309064 101 - 20766785
CAAACUUUCGCCUAAUCAACGAGCUACGUCCACUUACCCCUGGCUCCAACUCGAAAGGAGCUCGCUCCAACGCUCCCAAAAGCGGAUUUCGAGUGCCUCGC
.........((.........((((((.(..........).))))))..((((((((((((....))))..((((......))))..))))))))))..... ( -27.00)
>DroSec_CAF1 81566 101 - 1
CAAACUUUCGCUUAAUCAACGAGCUACGUCCACUUACCCCUGGCUCCAACUCGAAAGGAGCUCGCUCCAACGCUCCCAAAAGCGGAUUUCGAGUGCCUCGC
.........((.........((((((.(..........).))))))..((((((((((((....))))..((((......))))..))))))))))..... ( -27.40)
>DroSim_CAF1 76713 101 - 1
CAAACUUUCGCUUAAUCAACGAGCUACGUCCACUUACCCCUGGCUCCAACUCGAAAGGAGCUCGCUCCAACGCUCCCAAAAGCGGAUUUCGAGUGCCUCGC
.........((.........((((((.(..........).))))))..((((((((((((....))))..((((......))))..))))))))))..... ( -27.40)
>DroEre_CAF1 74081 83 - 1
CAAACUUUCGCUUAAUCAACG------------------CCGGAUCCAACUCGCAAAGAGCUCGCUCCAACGCUCCCAAAAGCGGAUUUCGAGUGCCACGC
........(((((((((....------------------..(((.(...(((.....)))...).)))..((((......))))))))..)))))...... ( -15.70)
>DroYak_CAF1 70247 101 - 1
CAAACUUUCGCUUAAUCAACGAGUUACGUUCACUUAUCCCCGGCUCCAACUCGAAAAGAGCUCGCUUAAACGCCCUCAAAAGCGGAUUCCGAGUGCCACGC
.........((......((((.....))))...........(((....(((((....(((..(((((............)))))..)))))))))))..)) ( -18.10)
>consensus
CAAACUUUCGCUUAAUCAACGAGCUACGUCCACUUACCCCUGGCUCCAACUCGAAAGGAGCUCGCUCCAACGCUCCCAAAAGCGGAUUUCGAGUGCCUCGC
.........................................(((....((((((((((((....))))..((((......))))..))))))))))).... (-18.32 = -19.36 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:13 2006