Locus 3516

Sequence ID 2R_DroMel_CAF1
Location 11,782,148 – 11,782,241
Length 93
Max. P 0.828314
window5727

overview

Window 7

Location 11,782,148 – 11,782,241
Length 93
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 77.72
Mean single sequence MFE -42.70
Consensus MFE -27.57
Energy contribution -26.82
Covariance contribution -0.74
Combinations/Pair 1.39
Mean z-score -1.62
Structure conservation index 0.65
SVM decision value 0.71
SVM RNA-class probability 0.828314
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11782148 93 - 20766785
ACAGGCACAGAUCGCCAAGCCGAUCCGGUCCGGCCAGGGUGCAAUCGCCAUUCGUGGUGGUGGCGCCGUUGGAG------GACCAUCCCCGCUGGCCCA
...(((.(((((((......))))).(((((..(((((((((.(((((((....))))))).))))).)))).)------))))........))))).. ( -43.50)
>DroPse_CAF1 2797 91 - 1
GCAGGCACAAAUCGCCAAGCCCAUUAGAGCGGGACAGGGCGCCAUUGCCAUACGAGGCGGUGGCGCUGUCGGCG------GAGCUCCAUUGCAGACC--
((((.......(((((..((((........))).)..((((((((((((......))))))))))))...))))------).......)))).....-- ( -40.04)
>DroEre_CAF1 2522 93 - 1
ACAGGCACAGAUCGCCAAGCCGAUCCGCGCCGGCCAGGGUGCAAUCGCCAUUCGUGGUGGUGGCGCCGUCGGCG------GACCAUCUCCACUGGCCCA
...(((.(.(((((......))))).).)))(((((((((((.(((((((....))))))).)))))......(------((.....))).)))))).. ( -45.40)
>DroYak_CAF1 2528 93 - 1
ACAGGCACAGAUCGCCAAGCCGAUCCGCGCCGGCCAGGGUGCAAUUGCAAUUCGUGGUGGUGGCGCCGUUGGCG------GACCAUCCCCGCUGGCCCA
...(((.(.(((((......))))).).)))(((((((((((....)).))))((((.(((((..(((....))------).))))).))))))))).. ( -41.60)
>DroAna_CAF1 2572 99 - 1
CCAAGCGCAAAUCGCCAAGCCGAUUCGCGCUGGCCAGGGUGCGAUCGCUAUCCGAGGUGGUGGUGCCGUUGGAGGUGCAGGAGCAGCGCCGCUGGCUCC
...(((((.(((((......))))).)))))(((((((((((...((((((.....))))))(..((......))..).......))))).)))))).. ( -45.60)
>DroPer_CAF1 2582 91 - 1
GCAGGCACAAAUCGCCAAGCCCAUUAGAGCGGGACAGGGCGCCAUUGCCAUACGAGGCGGUGGCGCUGUCGGCG------GAGCUCCAUUGCAGACC--
((((.......(((((..((((........))).)..((((((((((((......))))))))))))...))))------).......)))).....-- ( -40.04)
>consensus
ACAGGCACAAAUCGCCAAGCCGAUCCGCGCCGGCCAGGGUGCAAUCGCCAUUCGAGGUGGUGGCGCCGUCGGCG______GACCAUCACCGCUGGCCCA
...(((.(.(((((......))))).).)))(((((((((((.((((((......)))))).)))))...((................)).)))))).. (-27.57 = -26.82 +  -0.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:25 2006