Locus 3513

Sequence ID 2R_DroMel_CAF1
Location 11,768,197 – 11,768,287
Length 90
Max. P 0.973623
window5722

overview

Window 2

Location 11,768,197 – 11,768,287
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 94.89
Mean single sequence MFE -19.60
Consensus MFE -17.48
Energy contribution -17.44
Covariance contribution -0.04
Combinations/Pair 1.16
Mean z-score -1.69
Structure conservation index 0.89
SVM decision value 1.71
SVM RNA-class probability 0.973623
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11768197 90 - 20766785
CAACUUUAUGCAAAUUCCUAAUAGGCAUUUCCAUUUUCCACUUUGAAAUGCAAAGCUUUUGAAACAACAAGCAGCUGAAUUGGUGUCCUU
.......((((.(((((.......(((((((.............)))))))..((((((((......)))).))))))))).)))).... ( -15.22)
>DroSec_CAF1 12963 90 - 1
CAGCUUUAUGCAAAUUCCUAAUAGGCAUUUCCAUUUUCCACUUUGAAAUGCAAAGCUUUUGGAACAACAAGCAGCUGAGCUGGUGUCCUU
((((((..(((...((((....((((.(((.((((((.......)))))).)))))))..))))......)))...))))))........ ( -21.10)
>DroSim_CAF1 12311 90 - 1
CAGCUUUAUGCAAAUUCCUAAUAGGCAUUUCCAUUUUCCACUUUGAAAUGCAAAGCUUUUGGAACAACAAGCAGCUGAGCUGGUGUCCUU
((((((..(((...((((....((((.(((.((((((.......)))))).)))))))..))))......)))...))))))........ ( -21.10)
>DroEre_CAF1 12444 90 - 1
CAGCUUUAUGCAAAUUCCUUAUAGGCAUCUCCACUUUCCACUUUGAAAUGCAAAGAUUUUGGAACAACAAGCAGCUGAGCUGGUGUCCUU
((((((..(((............((.....))...((((((((((.....)))))....)))))......)))...))))))........ ( -19.80)
>DroYak_CAF1 13437 90 - 1
CAGCUUUAUGCAAAUUCCUUAUAGGCAUUUCCAUUUUCCACUUUUAAAUGCAAAGCUUUUGGAACAACAGGCAGCUAAGCUGGUGUCCUU
((((((..(((...((((....((((.(((.(((((.........))))).)))))))..))))......)))...))))))........ ( -20.80)
>consensus
CAGCUUUAUGCAAAUUCCUAAUAGGCAUUUCCAUUUUCCACUUUGAAAUGCAAAGCUUUUGGAACAACAAGCAGCUGAGCUGGUGUCCUU
((((((..(((.............(((((((.............))))))).......(((......))))))...))))))........ (-17.48 = -17.44 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:20 2006