| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,249,100 – 1,249,212 |
| Length | 112 |
| Max. P | 0.700616 |
| Location | 1,249,100 – 1,249,212 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.37 |
| Mean single sequence MFE | -22.99 |
| Consensus MFE | -19.20 |
| Energy contribution | -19.76 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.700616 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1249100 112 - 20766785 UAAGCACCCCAAGUGCUUCCGCAAACAUGAGCCACCUGAACUCAAACUC--------UUAGCCAGAGCUUUUGUUUGCUGAAAAGAUAGAUUUUGACUUCUACAAAUUUUCGCACAAACC ............((((....(((((((.((((...(((...........--------.....))).)))).))))))).(((((..((((........))))....)))))))))..... ( -25.49) >DroSim_CAF1 5508 111 - 1 UAAGCACCCCAAGUGCUUCCACAAACAUGAGCCACCUGAACUCAAACUC--------UUAGCCAGAGCUUUUGUUUGCUGAAAAGAUAGAUUUUGACUUCUACAAAUUUUCGCACAAG-C ............((((.....((((((.((((...(((...........--------.....))).)))).))))))..(((((..((((........))))....)))))))))...-. ( -21.49) >DroEre_CAF1 2916 112 - 1 UAAGCACCCCAAGUGCUUCCGCAAACAUGAGCCACCUGAACUCAAACUC--------CUCGCUAGGGCUUUUGUUUGCUGAAAAGAUAGAUUUUGACUUCUACAAAUUUUCGCACAAGCC ............((((....(((((((.(((((...(((..........--------.)))....))))).))))))).(((((..((((........))))....)))))))))..... ( -28.20) >DroYak_CAF1 3816 120 - 1 UAAGCACCCCAAGAACUUCCGCAAACAUACGCCACCUGAACUCAAACUCGAACACUUUUCCAUAGAGCUUUUGUUUGCUGAAAAGAUAGAUUUUGACUUCUACAAAUUUUCGCACAAGGC ...((...............(((((((...(((...((....)).....(((.....)))....).))...))))))).(((((..((((........))))....)))))))....... ( -16.80) >consensus UAAGCACCCCAAGUGCUUCCGCAAACAUGAGCCACCUGAACUCAAACUC________UUAGCCAGAGCUUUUGUUUGCUGAAAAGAUAGAUUUUGACUUCUACAAAUUUUCGCACAAGCC ............((((....(((((((.((((...(((........................))).)))).))))))).(((((..((((........))))....)))))))))..... (-19.20 = -19.76 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:06 2006