Locus 3498

Sequence ID 2R_DroMel_CAF1
Location 11,731,759 – 11,731,855
Length 96
Max. P 0.631266
window5698

overview

Window 8

Location 11,731,759 – 11,731,855
Length 96
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 82.00
Mean single sequence MFE -16.98
Consensus MFE -11.02
Energy contribution -11.06
Covariance contribution 0.04
Combinations/Pair 1.07
Mean z-score -1.79
Structure conservation index 0.65
SVM decision value 0.20
SVM RNA-class probability 0.631266
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11731759 96 - 20766785
CUAAUGCCAAA----AAUCAGAAAUAAAAAUUUCACCUCCGGUCACACGCUUGAGAAGACACACUCGACAGCAACAGUAACGCAAACUGGCGGAAUGAAA
...........----..((((((((....)))))...((((.......(((((((........))))..)))..((((.......)))).)))).))).. ( -16.50)
>DroSec_CAF1 16993 96 - 1
CUAAUGCCAAA----AAUCAGAAAUAAAAAUUUCACCUCCGGUCACACGCUUGAGAAGACACACUCGACAGCAACGGCAACGCAAACUGGCGGAAUGAAA
...........----..((((((((....))))).((.(((((.....(((((((........))))..)))..((....))...))))).))..))).. ( -20.10)
>DroSim_CAF1 17766 80 - 1
CUAAUGCCAAA----AAUCAGAAAUAAAAAUUUCACCUCCGGUCACACGCUUGAGAAGACAC----------------AACGCAAACUGGCGGAAUGAAA
...........----..((((((((....))))).((.(((((....((.(((........)----------------))))...))))).))..))).. ( -13.00)
>DroYak_CAF1 17286 96 - 1
CUAAUGCCAAA----AAUCAGAAAUAAAAAUUUCACCUCCGGUCACACGCUUGAAAAGUCACACUCGACAGCAGCAACAACGCAAACUGGCGGAAUAAAA
...........----.....(((((....))))).((.(((((.....(((......(((......)))))).((......))..))))).))....... ( -16.00)
>DroAna_CAF1 16749 85 - 1
CUAAUGCCAAAAAAAAAUCAGAAAUGAAAAUUUCACCUCCGGUCACACGCUUGAGGAGUCAC---------------CAGCACACUCCGGUGAAAUGAAU
.................(((....)))..((((((((((.(((.....))).))(((((...---------------......))))))))))))).... ( -19.30)
>consensus
CUAAUGCCAAA____AAUCAGAAAUAAAAAUUUCACCUCCGGUCACACGCUUGAGAAGACACACUCGACAGCA_C__CAACGCAAACUGGCGGAAUGAAA
....((((............(((((....)))))..(((.(((.....))).))).................................))))........ (-11.02 = -11.06 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:57 2006