Locus 3492

Sequence ID 2R_DroMel_CAF1
Location 11,713,223 – 11,713,315
Length 92
Max. P 0.835535
window5692

overview

Window 2

Location 11,713,223 – 11,713,315
Length 92
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 75.65
Mean single sequence MFE -27.08
Consensus MFE -15.36
Energy contribution -16.33
Covariance contribution 0.97
Combinations/Pair 1.18
Mean z-score -1.78
Structure conservation index 0.57
SVM decision value 0.73
SVM RNA-class probability 0.835535
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11713223 92 + 20766785
AUCAAGGAAUGAUGCGACCCCGGCUGAUCCCUCACAUUGGCAUCAGCUCA----CUUAACCAACAGCUGGGGCUGUGCAU-----CUGGUCUUUAUUUGCC
...(((((..((((((.(((((((((............(((....)))..----.........)))))))))...)))))-----)...)))))....... ( -31.20)
>DroPse_CAF1 3051 89 + 1
AUCAGCCCCUGAU----CCCUAGUUGA--CCUUGCACUGGCGUCAGCACAUCACCUCUACGUACGGCUGUACCCGUAUAUUGAUACCCGUAUAUA------
(((((........----.....(((((--(((......)).)))))).............((((((......)))))).)))))...........------ ( -17.20)
>DroSec_CAF1 1877 92 + 1
AUCAAGGAAUGAUGCGACCCCGGCUGAUCCCUCACAUUGGCGUCAGCCCA----UAUAACCAACAGCUGGGGCUGUGCAU-----CUGGUCUUUAUUUGCC
...(((((..((((((.(((((((((............(((....)))..----.........)))))))))...)))))-----)...)))))....... ( -33.80)
>DroSim_CAF1 1879 92 + 1
AUCAAGGAAUGAUGCGACCCCGGCUGAUCCCUCACAUUGGCGUCAGCCCA----CUUAACCAACAGCUGGGGCUGUGCAU-----CUGGUCUUUAUUUGCC
...(((((..((((((.(((((((((............(((....)))..----.........)))))))))...)))))-----)...)))))....... ( -33.80)
>DroEre_CAF1 1881 84 + 1
AUCAAGGAA-AAUGCGACCCGAGCUGAUCCC-------UGCGUCAGCCCA----CUGAACCAACAACUGGGGCUGUGCAU-----CUGGUCUUUAUUUGCC
.....((.(-((((.((((.((((((((...-------...)))))).((----(.(..(((.....)))..).)))..)-----).))))..))))).)) ( -23.10)
>DroYak_CAF1 1926 92 + 1
AUCAAGGAAUGAUGCGACCUCAGCUGAUCCCGCACACUAGCGUCAGCCCA----CUUAACCAACAGCUGGGACUGUGCAU-----CUGGUCAUUAUUUGCC
......((..((((((..((((((((....(((......)))..((....----)).......))))))))....)))))-----)...)).......... ( -23.40)
>consensus
AUCAAGGAAUGAUGCGACCCCAGCUGAUCCCUCACAUUGGCGUCAGCCCA____CUUAACCAACAGCUGGGGCUGUGCAU_____CUGGUCUUUAUUUGCC
...............((((...((((((.((.......)).))))))...............(((((....)))))...........)))).......... (-15.36 = -16.33 +   0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:51 2006