| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,299,907 – 2,300,000 |
| Length | 93 |
| Max. P | 0.609647 |
| Location | 2,299,907 – 2,300,000 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 69.84 |
| Mean single sequence MFE | -23.53 |
| Consensus MFE | -7.70 |
| Energy contribution | -8.53 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.33 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.609647 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2299907 93 + 20766785 UCAAUUAUGCAAAUCGCAUUUAUUGGCCCAUGAUUUAUGCGAUAUAUAUGCAUAUCGUGCAUA--------UAUGUAUAAGAUGGAC----GAAAUGGAGCGAGA----- .............((((.((((((.(.((((..(((((((...((((((((((...)))))))--------)))))))))))))).)----..))))))))))..----- ( -25.00) >DroSec_CAF1 65839 98 + 1 CCAAUUAUGCAAAUCGCAUUUAUUGGCCCAUGAUUUAUGCGAUUUUCG---AGACUGUGCAUAUACAUUUGUAUGUAUAAGAUGGGC----GAAAUGGAGCGAGA----- .............((((.((((((.((((((........((.....))---....((((((((((....))))))))))..))))))----..))))))))))..----- ( -27.50) >DroSim_CAF1 67335 98 + 1 UCAAUUAUGCAAAUCGCAUAUAUUGGCCCAUGAUUUAUGCGAUUUUCA---AGACUGUGCAUAUACAUUUGUAUGUGUAAGAUGGGC----GAAAUGGAGCGAGA----- .............((((...((((.((((((.........(.....).---...((.(((((((((....)))))))))))))))))----..))))..))))..----- ( -25.60) >DroEre_CAF1 65684 77 + 1 UCAAUUAUGCAAAUCGCAUUUAUUGGCCGAUGUUUUAUGCGAUAUUGG---AACCU---------------------GAUGAUGGGC----GAAAUGGAGCGAGA----- .......(.((..((((..((((..(((((((((......))))))))---...).---------------------.))))...))----))..)).)......----- ( -17.10) >DroYak_CAF1 61720 83 + 1 UCAAUUAUGCAAAUCGCAUUUAUUGGUUGAUGAUAAAUGCGA----------ACCUGUGCAUA--------UAUGUAGAUUAUGGGA----GAAAUGAACCGAGC----- .....((((((..((((((((((((.....))))))))))))----------.....))))))--------...........(((..----........)))...----- ( -19.40) >DroAna_CAF1 80424 95 + 1 UCAAUUAUGCAAAUCGCAUUUAUUGAGCCAUGAUUUAUGCGAUUUCAG---AAUGUGUGAAUA----------UUU--AUGACGAGCGGUCCAAACGGACCUGGCUUUCG (((((.((((.....))))..)))))((((........((....((((---(((((....)))----------)))--.)))...))(((((....)))))))))..... ( -26.60) >consensus UCAAUUAUGCAAAUCGCAUUUAUUGGCCCAUGAUUUAUGCGAUUUUCG___AAACUGUGCAUA________UAUGUAUAAGAUGGGC____GAAAUGGAGCGAGA_____ (((.........(((((((..((((.....))))..)))))))..............(((((((......))))))).....)))......................... ( -7.70 = -8.53 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:06 2006