Locus 3487

Sequence ID 2R_DroMel_CAF1
Location 11,694,825 – 11,694,920
Length 95
Max. P 0.577016
window5685

overview

Window 5

Location 11,694,825 – 11,694,920
Length 95
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 97.69
Mean single sequence MFE -20.32
Consensus MFE -20.80
Energy contribution -20.48
Covariance contribution -0.32
Combinations/Pair 1.08
Mean z-score -1.07
Structure conservation index 1.02
SVM decision value 0.09
SVM RNA-class probability 0.577016
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11694825 95 + 20766785
UGGGGUUAAAGCUGGAGUUCAAAGCUUU-UUUGGCUAUUGUUUUCCUUUUUCCUCUCUCUUUUUGCACUUGAAAUUGCAAUUGCAUUUGCUCGCCG
...(((...(((.((((..(((((((..-...)))).)))..)))).................((((.(((......))).))))...))).))). ( -21.00)
>DroSec_CAF1 34895 95 + 1
UGGGGUUAAAGCUGGAGUUCAAAGCUUU-UUUGGCUAUUGUUUUCCUUUUCCCUCUCUCUUUUUGCACUUGAAAUUGCAGUUGCAUUUGCUCGCCG
...(((...(((.((((..(((((((..-...)))).)))..)))).................((((.(((......))).))))...))).))). ( -20.70)
>DroSim_CAF1 30763 95 + 1
UGGGGUUAAAGCUGGAGUUCAAAGCUUU-UUUGGCUAUUGUUUUCCUUUUCCCUCUCUCUUUUUGCACUUGAAAUUGCAGUUGCAUUUGCUCGCCG
...(((...(((.((((..(((((((..-...)))).)))..)))).................((((.(((......))).))))...))).))). ( -20.70)
>DroEre_CAF1 30913 96 + 1
AGGGGUUAAAGCUGGAGUUCAAAGCUUUUUUUGGCUAUUGUUUUCCUUUUCCCUCUCUCUUUUUGCACUUGAAAUUGCAGUUGCAUUUGCUCGCCG
(((((..(((...((((..(((((((......)))).)))..)))))))..))))).......((((.(((......))).))))........... ( -20.90)
>DroYak_CAF1 31317 95 + 1
AGGGGUUAAAGCUGGAGUUCAAAGCUUU-UUUGGUUAUUGUUUUCCUUUUCCCUCUCUCUUUUUGCACUUGAAAUUGCAGUUGCAUUUGCUCGCCG
(((((..(((...((((..(((((((..-...)))).)))..)))))))..))))).......((((.(((......))).))))........... ( -18.30)
>consensus
UGGGGUUAAAGCUGGAGUUCAAAGCUUU_UUUGGCUAUUGUUUUCCUUUUCCCUCUCUCUUUUUGCACUUGAAAUUGCAGUUGCAUUUGCUCGCCG
...(((...(((.((((..(((((((......)))).)))..)))).................((((.(((......))).))))...))).))). (-20.80 = -20.48 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:44 2006