Locus 3486

Sequence ID 2R_DroMel_CAF1
Location 11,694,606 – 11,694,717
Length 111
Max. P 0.986629
window5684

overview

Window 4

Location 11,694,606 – 11,694,717
Length 111
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 97.84
Mean single sequence MFE -26.00
Consensus MFE -25.06
Energy contribution -25.10
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.71
Structure conservation index 0.96
SVM decision value 2.05
SVM RNA-class probability 0.986629
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11694606 111 - 20766785
AAACAAUUUGCAGUGUCAGGAGCGCUUUCCACACAUUCUGGGAAAUCGCAACGGGUCUUGAAUAUCUAAAAGAAUGCCGCAGCAAAAAAGCCCAAAACGGAAAACUGUAAA
......((((((((.((.(..(((.(((((.((.....))))))).)))..)(((.(((.....((.....)).(((....)))...)))))).....))...)))))))) ( -26.80)
>DroSec_CAF1 34676 111 - 1
AAACAAUUUGCAGUGUCAGGAGCGCUUUCCACACAUUCUGGGAAAUCGCAACGGGUCUUGAAUACCUAAAAGAAUGCCGCAGCAAAAAAGCCCAAAACGGAAAACUGUGCA
.........(((((.((.(..(((.(((((.((.....))))))).)))..)(((((((..........)))).(((....)))......))).....))...)))))... ( -24.00)
>DroSim_CAF1 30544 111 - 1
AAACAAUUUGCAGUGUCAGGAGCGCUUUCCACACAUUCUGGGAAAUCGCAACGGGUCUUGAAUACCUAAAAGAAUGCCGCAGCAAAAAAGCCCAAAACGGAAAACUGUAAA
......((((((((.((.(..(((.(((((.((.....))))))).)))..)(((((((..........)))).(((....)))......))).....))...)))))))) ( -26.20)
>DroEre_CAF1 30697 110 - 1
AAACAAUUUGCAGUGUCAGGAGCGCUUUCCACACAUUCUGGGAAAUCGCAACGGGUCUUGAAUACCUAUAAGAAUGCCGCAGCAAA-AAGCCCAAAACGGAAAACUGUAAA
......((((((((.((.(..(((.(((((.((.....))))))).)))..)((((((((........))))).(((....)))..-...))).....))...)))))))) ( -26.50)
>DroYak_CAF1 31100 110 - 1
AAACAAUUUGCAGUGUCAGGAGCGCUUUCCACACAUUCUGGGAAAUCGCAACGGGUCUUGAAUACCUAUAAGAAUGCCGCAGCAAA-AAGCCCAAAACGGAAAACUGUAAA
......((((((((.((.(..(((.(((((.((.....))))))).)))..)((((((((........))))).(((....)))..-...))).....))...)))))))) ( -26.50)
>consensus
AAACAAUUUGCAGUGUCAGGAGCGCUUUCCACACAUUCUGGGAAAUCGCAACGGGUCUUGAAUACCUAAAAGAAUGCCGCAGCAAAAAAGCCCAAAACGGAAAACUGUAAA
......((((((((.((.(..(((.(((((.((.....))))))).)))..)(((((((..........)))).(((....)))......))).....))...)))))))) (-25.06 = -25.10 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:43 2006