Locus 3485

Sequence ID	2R_DroMel_CAF1
Location	11,694,489 – 11,694,582
Length	93
Max. P	0.697035

overview

Window 3

Location	11,694,489 – 11,694,582
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	96.55
Mean single sequence MFE	-23.45
Consensus MFE	-22.38
Energy contribution	-22.18
Covariance contribution	-0.20
Combinations/Pair	1.08
Mean z-score	-1.16
Structure conservation index	0.95
SVM decision value	0.34
SVM RNA-class probability	0.697035
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11694489 93 - 20766785
GCACAACGAAGAAAAUAAAACGAGAUUUCUUGUGCAUUGGCAGAACUGGUUUGCCCAGUAAUAGGUGUUGUUGGCCUAUGGGGGAACGGGAAG
((((((.((((..............))))))))))..........((.((((.((((....(((((.......))))))))).)))).))... ( -25.34)
>DroSec_CAF1 34549 93 - 1
GCUCAACGAAGAAAAUAAAACGAGAUUUCUUGUGCAUUGGCAGAACUGGUUUGCCCAGUAAUAGGUGUUGUUGGCCUAUGGGGGAACGGGAAG
((.(((.(...........(((((....))))).).)))))....((.((((.((((....(((((.......))))))))).)))).))... ( -23.60)
>DroSim_CAF1 30430 93 - 1
GCACAACGAAGAAAAUAAAACGAGAUUUCUUGUGCAUUGGCAGAACUGGUUUGCCCAGUAAUAGGUGUUGUUGGCCUAUGGGGGAACGGGAAG
((((((.((((..............))))))))))..........((.((((.((((....(((((.......))))))))).)))).))... ( -25.34)
>DroEre_CAF1 30583 90 - 1
GCACAACGAAGAAAAUAAAACGAGAUUUCUUGUGCAUUGGCAGAACUGGUUUGCCCAGUAAUAGGUGU---UGGUCUAUGGGGGAACGGGAAG
((((((.((((..............))))))))))..........((.((((.((((....((((...---...)))))))).)))).))... ( -21.64)
>DroYak_CAF1 30993 90 - 1
GCACAGCGAAGAAAAUAAAACGAGAUUUCUUGUGCAUUGGCAGAACUGGUUUGCCCAGUAAUAGGUGU---UGGUCUAUGGGGGAACGGGAAG
((((((.((((..............))))))))))..........((.((((.((((....((((...---...)))))))).)))).))... ( -21.34)
>consensus
GCACAACGAAGAAAAUAAAACGAGAUUUCUUGUGCAUUGGCAGAACUGGUUUGCCCAGUAAUAGGUGUUGUUGGCCUAUGGGGGAACGGGAAG
((((((.((((..............))))))))))..........((.((((.((((....(((((.......))))))))).)))).))... (-22.38 = -22.18 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:42 2006