| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,692,085 – 11,692,175 |
| Length | 90 |
| Max. P | 0.956943 |
| Location | 11,692,085 – 11,692,175 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 77.12 |
| Mean single sequence MFE | -19.88 |
| Consensus MFE | -15.61 |
| Energy contribution | -15.70 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.956943 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11692085 90 - 20766785 AG-AUUACUAUCUGUAUCUAUAUCUGCUGGCCACUUCUCCAGCCUGUGAAGUGGCUUGAUAAGAUUCUAGGGAUCCAAAA-AAUCCAACAAA .(-((..(((.....((((.((((....(((((((((.(......).))))))))).))))))))..)))..))).....-........... ( -23.50) >DroSec_CAF1 32182 87 - 1 AU-AUUACUAUCUGUAUCUAUAUCUGCUGGCCACUUCUCCAGCCUGUGAAGUGGCUUGAUAAGAUUCUAGGGAUCCAAAA-AAUGAAAA--- ..-.........((.((((..((((.(.(((((((((.(......).))))))))).)...)))).....)))).))...-........--- ( -21.20) >DroSim_CAF1 28055 89 - 1 AG-AUUACUAUCUGUAUCUAUAUCUGCUGCCCACUUCUCCAGCCUGUGAAGUGGCUUGAUAAGAUUCUAGGGAUCCAAAA-AAUGAAAAAA- .(-((..(((.....((((.((((....(((.(((((.(......).))))))))..))))))))..)))..))).....-..........- ( -18.60) >DroEre_CAF1 28224 82 - 1 AG-AUUACUAUCAGUAUCUAUAUCUGCUGGCCACUUCUCCAGCAUUUGAAGUGGCGUGAUAAGAUUCUAGGGAUCCAAAAAAA--------- ..-(((((...(((((........)))))((((((((..........)))))))))))))..((((.....))))........--------- ( -22.40) >DroYak_CAF1 28637 82 - 1 AUUAUCAGUAUCUGUAUCUGUAUCUGUUGACCACUUCUCCAGCAUGUGAAGUGGCUUGAUAAGAUUCUAGGGAUCCAAGU-AA--------- ........((..((.((((.(((((((..((((((((.(......).))))))).)..)).)))...)).)))).))..)-).--------- ( -18.80) >DroAna_CAF1 32798 71 - 1 AG-AUUAUCAUCAAUUGCUAUAUCUGCUGGCCACUUCUGCUGUGGAUGAAGUGCUCAGAUAAGAUUUUCGUA-------------------- ..-............(((...((((.(((..((((((..........))))))..)))...))))....)))-------------------- ( -14.80) >consensus AG_AUUACUAUCUGUAUCUAUAUCUGCUGGCCACUUCUCCAGCCUGUGAAGUGGCUUGAUAAGAUUCUAGGGAUCCAAAA_AA_________ ................((((.((((.(.(((((((((..........))))))))).)...))))..))))..................... (-15.61 = -15.70 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:40 2006