Locus 3481

Sequence ID 2R_DroMel_CAF1
Location 11,691,189 – 11,691,289
Length 100
Max. P 0.512142
window5678

overview

Window 8

Location 11,691,189 – 11,691,289
Length 100
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 91.89
Mean single sequence MFE -24.81
Consensus MFE -22.47
Energy contribution -22.80
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.56
Structure conservation index 0.91
SVM decision value -0.04
SVM RNA-class probability 0.512142
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11691189 100 - 20766785
AAGUGCAUCCAGUUUUGUUUUAGCCUAUAAAAAGCUAUAUGUAUUACCAAUAUUCCAGAGGUGGAGGUGACUGUGGUUUCUACGGUCUACACACUCGGCU
.(((((((..((((((..............))))))..))))))).........((.((((((.....((((((((...))))))))..))).))))).. ( -24.74)
>DroSec_CAF1 31357 96 - 1
AAGUGCAUCCAUUUUUGUAUUAGCCUAUAAUAAGCUAUA----UAACCAAUAUUCCAGAGGUGGAUGUGACUGUGGUUUCUACGGUCUACACACUCGGCU
.((((((((((((((((...((((.........))))((----(.....)))...)))))))))))).((((((((...))))))))....))))..... ( -25.50)
>DroSim_CAF1 27237 96 - 1
AAGUGCAUCCAUUUUUGUAUUAGCCUAUAAUAAGCUAUA----AAACCCAUAUUUCAGAGGUGGAGGUGACUGUGGUUUCUACGGUCUACACACUCGGCU
.((((((........))))))((((((((......))))----..............((((((.....((((((((...))))))))..))).))))))) ( -24.20)
>consensus
AAGUGCAUCCAUUUUUGUAUUAGCCUAUAAUAAGCUAUA____UAACCAAUAUUCCAGAGGUGGAGGUGACUGUGGUUUCUACGGUCUACACACUCGGCU
.((((((........))))))((((((((......))))..................((((((.....((((((((...))))))))..))).))))))) (-22.47 = -22.80 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:37 2006