| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,690,905 – 11,691,015 |
| Length | 110 |
| Max. P | 0.516401 |
| Location | 11,690,905 – 11,691,015 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 79.43 |
| Mean single sequence MFE | -33.30 |
| Consensus MFE | -21.50 |
| Energy contribution | -21.45 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516401 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11690905 110 + 20766785 U------UUUAUAUAAACAUACGCUUAUAUUCAGUGUAGGCAUAGAUGGUUUGGUCAGAAGGCGGUGGUUUGCCGGAGACAUUCGAACGGAAUGAAACCACCGAUGUGUAGAAGGU (------((((((((..(((..((((((((...))))))))....)))..............(((((((((.(((..(.....)...)))....))))))))).)))))))))... ( -30.40) >DroSec_CAF1 31067 116 + 1 UUCCAUAUUUAUUUUAACUCACGCUUAUAUUCAGUGUAGGCAUAGAUCGUUUGGUCAGUAGGCGGUGGUUUGCCGGAGACAUUCGAUCGGAAUGAAACCACCGACGUGUAGAAGGU .................(((((((((((((...))))))))...((((....))))....(.(((((((((.((((.(.....)..))))....))))))))).)))).))..... ( -31.10) >DroSim_CAF1 26947 116 + 1 AUCCAUAUUUAUAUGAACUCACGCUUAUAUUCAGUGUAGGCAUAGAUCGUUUGGUCACUAGGCGGUGGUUUGCCGGAGACAUUCGAUCGGAAUGAAACCACCGACGUGUAGAAGGU .......((((((((.......((((((((...))))))))...((((....))))......(((((((((.((((.(.....)..))))....))))))))).)))))))).... ( -32.90) >DroEre_CAF1 27184 114 + 1 GUG--AAUAUGUAUUAACUCACGCUUAUAUUCAGUGUAGGCAUUGACCGGUUGGUCAGAAGGCGAUGGCUUGCCGACGACCUUUGACCGGAAUGAGACCACCGACGUGUAGAAGGU ...--.((((((.....((((.((((((((...)))))))).....((((((((((.(..(((((....)))))..)))))...))))))..)))).......))))))....... ( -35.10) >DroYak_CAF1 27547 114 + 1 UCA--AAUAUGUAUCAACUCACGCUUAUAUUCAGUGUAGGCAUAUUUCGUUUGGUCGGAAGGCGUUGGUUUGCCGACGACCUUUGACCGGAACGAAACCACCGACGUGUAGAAGGU ...--.......(((..(((((((((((((...))))))))...(((((((((((((.((((((((((....)))))).))))))))).))))))))........))).))..))) ( -40.30) >DroAna_CAF1 31758 112 + 1 U----UUUUGAAGUCCACUCACGUUUAUACUCCGUGUAGGCAUAAAUAAUCUGAUCGGCAGAUGGUGGCUUUUCGGCUACAUUGGAUCGAAAGGACACCACACAGGUGUAGAAGGU (----((((((..((((.....((((((((...)))))))).......(((((.....))))).((((((....))))))..))))))))))).(((((.....)))))....... ( -30.00) >consensus UU___UAUUUAUAUCAACUCACGCUUAUAUUCAGUGUAGGCAUAGAUCGUUUGGUCAGAAGGCGGUGGUUUGCCGGAGACAUUCGAUCGGAAUGAAACCACCGACGUGUAGAAGGU .................(((((((((((((...))))))))............(((....)))((((((((.(((............)))....))))))))...))).))..... (-21.50 = -21.45 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:36 2006