Locus 348

Sequence ID 2R_DroMel_CAF1
Location 2,294,219 – 2,294,316
Length 97
Max. P 0.551925
window693

overview

Window 3

Location 2,294,219 – 2,294,316
Length 97
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 75.32
Mean single sequence MFE -23.36
Consensus MFE -4.99
Energy contribution -4.82
Covariance contribution -0.17
Combinations/Pair 1.40
Mean z-score -1.59
Structure conservation index 0.21
SVM decision value 0.04
SVM RNA-class probability 0.551925
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2294219 97 + 20766785
------AAUGAAUUCGCUGGGAGAACCAAUAACUCUUUCUAAGAGCUAUUUAAAC-----------GCUUCACUGUUUGAAUGACGAUCAAAAUAUAAACAGUAGAUAACUUGA
------.....(((..(((((....)).....((((.....)))).(((((((((-----------(......))))))))))................)))..)))....... ( -14.00)
>DroSec_CAF1 60125 106 + 1
------AAUGAAUUUGCUGGGAGAACCAAUAACUCUUUCUAAGAGAUAGUUAAACGUUCUCUGGACGCUUCACUGUACGAGUG--GAUCAAAAUAUAAACAGUAGAUAACGUGA
------.....(((((((((((((((...(((((.((((...)))).)))))...)))))))....(.((((((.....))))--)).)..........))))))))....... ( -27.00)
>DroSim_CAF1 60998 106 + 1
------AAUGAAUUGGCUGGGAGAACCAAUAACUCUUUCUAAGAGAUAGUUAAACGUUCUCUUGACGCUUCACUGUACGAGUG--GAUCAAAAUAUAAACAGUAGAUAACGUGA
------.....(((.(((((((((((...(((((.((((...)))).)))))...)))))))....(.((((((.....))))--)).)..........)))).)))....... ( -23.10)
>DroEre_CAF1 60142 103 + 1
GAAAACAACAAACUCGGCGGGAGAGCGAAGAGCGCUUUCUAAAAGAUAUUUGAACGUUCUCUGGACGCUUCACUGUACGAGUG--GAUCAAAAUAUAAACAGUGG---------
...........(((((((((..(((((.((((.((.(((............))).)).))))...)))))..)))).))))).--....................--------- ( -26.00)
>DroYak_CAF1 56242 112 + 1
GAUAACAAUUAGUUCGGCAAGAGAACUAAGAUCUCUUUCUCAAAAAUAUUUUAACGUUCACUUGACGCUUCACUGUACGAGUG--GAUCAAAAUAUUAAGAGAAGAUAACGAUA
(((.....(((((((.......))))))).)))..((((((...((((((((...((((((((((((......))).))))))--))).))))))))..))))))......... ( -26.70)
>consensus
______AAUGAAUUCGCUGGGAGAACCAAUAACUCUUUCUAAGAGAUAUUUAAACGUUCUCUGGACGCUUCACUGUACGAGUG__GAUCAAAAUAUAAACAGUAGAUAACGUGA
...........(((((..((((((.........))))))...............((((.....))))..........)))))................................ ( -4.99 =  -4.82 +  -0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:06 2006