| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,686,455 – 11,686,553 |
| Length | 98 |
| Max. P | 0.643396 |
| Location | 11,686,455 – 11,686,553 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 77.98 |
| Mean single sequence MFE | -21.13 |
| Consensus MFE | -16.70 |
| Energy contribution | -17.03 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.13 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.643396 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11686455 98 + 20766785 CAAUG-----------GCACUGAAAAAA----A------AACCCACCUGGAAUCGCAGCUUUUUGACCGUUUCGAAAAUGUUGAUUUUCGACUCGCUCUUCAAUCGCUGCAUGAUCAGA .....-----------...((((.....----.------...((....))....(((((...((((.((..((((((((....))))))))..))....))))..)))))....)))). ( -24.90) >DroGri_CAF1 28125 111 + 1 UAAGUUGCAG--U---CCAUUAG---AAAUCAGUUUUUGCACCCACCUGAAAUCGCAGUUUCUUGACCGUUUCAAAAAUAUUGAUUUUCGAUUCGCUCUUCAGACGCUGCAUUAUCAAA .....(((((--.---.....(.---...)......)))))......((((((.(((((.(((.((.((..((.(((((....))))).))..)).))...))).)))))))).))).. ( -18.80) >DroSec_CAF1 26640 108 + 1 CAAUGUAUACAACUAACCACUGA-AAAA----A------AACCCACCUGGAAUCGCAGUUUCUUGACCGUUUCGAAAAUGUUGAUUUUCGACUCGCUCUUCAAUCGCUGCAUGAUCAGA ...................((((-....----.------...((....))....(((((...((((.((..((((((((....))))))))..))....))))..)))))....)))). ( -22.60) >DroSim_CAF1 22546 101 + 1 CUUUGUAU------AACCACUA--AAAA----A------AACUCACCUGGAAUCGCAGUUUCUUGACCGUUUCGAAAAUGUUGAUUUUCGACUCGCUCUUCAAUCGCUGCAUGAUCAGA ........------........--....----.------.......((((....(((((...((((.((..((((((((....))))))))..))....))))..)))))....)))). ( -19.60) >DroEre_CAF1 22644 103 + 1 AUAGGUAC--AGGCUACCACUGA----A----A------AACCCACCUGGAAUCGCAGUUUUUUCACCGUUUCGAAUAUAUUGAUUUUCGACUCGCUCUUCAGUCGCUGCAUGAUCAGA ...((((.--....)))).((((----.----.------...((....))....(((((........((..(((((..........)))))..))..........)))))....)))). ( -19.97) >DroYak_CAF1 22943 103 + 1 AUGGGUAU--GCGUUACCAUUGA----A----A------AACUCACCUGGAAACGCAGUUUUUUGACCGUUUCGAAAAUAUUGAUUUUAGACUCGCUCUUCAAUCGCUGCAUGAUCAGA .((..(((--(((((.(((.(((----.----.------...)))..))).)))((...(((((((.....)))))))....((((..(((.....)))..)))))).)))))..)).. ( -20.90) >consensus CAAGGUAU_______ACCACUGA___AA____A______AACCCACCUGGAAUCGCAGUUUCUUGACCGUUUCGAAAAUAUUGAUUUUCGACUCGCUCUUCAAUCGCUGCAUGAUCAGA ..............................................((((....(((((...((((.((..((((((((....))))))))..))....))))..)))))....)))). (-16.70 = -17.03 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:34 2006