Locus 3476

Sequence ID 2R_DroMel_CAF1
Location 11,674,449 – 11,674,556
Length 107
Max. P 0.605286
window5672

overview

Window 2

Location 11,674,449 – 11,674,556
Length 107
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 90.90
Mean single sequence MFE -25.56
Consensus MFE -18.10
Energy contribution -19.18
Covariance contribution 1.08
Combinations/Pair 1.12
Mean z-score -2.12
Structure conservation index 0.71
SVM decision value 0.15
SVM RNA-class probability 0.605286
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11674449 107 + 20766785
CUUGUUUCCAUUUUAUUUUAAUUACUUAAUUCAAGUGAUUUUCCGCCAGAACGAAAGUUCAAGUGACUACCGAUUUGCGGUCGAAUUAACUC-GGAAACUCGGCUCAU
...((((((..........((((((((.....))))))))(((.(((.((((....))))..(..(........)..)))).))).......-))))))......... ( -25.40)
>DroSec_CAF1 14545 108 + 1
CUUGUUUCCAUUUUAAUUUAAUUACUAAAUUCAAGUGAUUUUCCGCCAGAACGAAAGUUCAAGUGACUACCGAUUUGCGGUCGAGUUAACUCCGGCAACUCUGCUCAU
........(((((.((((((.....)))))).))))).......(((.((((....))))...(((((((((.....))))..))))).....)))............ ( -24.70)
>DroSim_CAF1 10515 108 + 1
CUUGUUUCCAUUUUAUUUUAAUUACUUAAUUCAAGUGAUUUUCCGCCAGAACGAAAGUUCAAGUGACUACCGAUUUGCGGUCGAGUUAACUCUGGCAACUCGGCUCAU
..((...((..........((((((((.....))))))))....((((((((....))))...(((((((((.....))))..)))))....)))).....))..)). ( -26.00)
>DroEre_CAF1 10406 107 + 1
CUUGUUUCCAUUUUAUUUUAAUUAGUUCAUUCAAGUGAUUUUACGCCAGAACGAAAGUUCAAGUGACUGCUGAUUUGCGGUUGAGUUAACUC-GGAAACUCGUCUCAU
...((((((.................((((....)))).....(((..((((....))))..)))(((((......))))).(((....)))-))))))......... ( -26.30)
>DroYak_CAF1 10512 103 + 1
CU----UCAAUUUUAUUUUAAUUAUUUCACUGAAGUGAUUUUCCGCAAGAACGAAAGUUCAAGUGACUACUGAUUUGCGGUCGAGUUAACUC-GGAAACUCGUCUCAU
..----........................(((..(((.(((((....((((....))))....(((..(......)..)))(((....)))-))))).)))..))). ( -25.40)
>consensus
CUUGUUUCCAUUUUAUUUUAAUUACUUAAUUCAAGUGAUUUUCCGCCAGAACGAAAGUUCAAGUGACUACCGAUUUGCGGUCGAGUUAACUC_GGAAACUCGGCUCAU
...((((((..........((((((((.....))))))))...(((..((((....))))..))).(.((((.....)))).)..........))))))......... (-18.10 = -19.18 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:30 2006