Locus 3470

Sequence ID 2R_DroMel_CAF1
Location 11,650,664 – 11,650,774
Length 110
Max. P 0.885427
window5662

overview

Window 2

Location 11,650,664 – 11,650,774
Length 110
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.69
Mean single sequence MFE -34.03
Consensus MFE -25.84
Energy contribution -26.72
Covariance contribution 0.88
Combinations/Pair 1.12
Mean z-score -2.10
Structure conservation index 0.76
SVM decision value 0.94
SVM RNA-class probability 0.885427
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11650664 110 - 20766785
UAAGCUACGACUAUCGAU---------UAUCGGUGCAGUUGA-AAAUACAUUCUUGUGGCGACUAGGUGUUAAACCCUUAUAGGUUCGCUCCAGAAAGUAUUCUACAUUGCGACCGAAAC
.......((.....))..---------..((((((((((...-.(((((.((((.(..((((((((((.....)))....)))..))))..))))).)))))....))))).)))))... ( -28.70)
>DroSec_CAF1 23159 119 - 1
UAAGCUACGACUAUCGAUGAAACCAUCUAUCGGUGCAGUUGA-AGAUACAUUCUUGGGGCGACUAGGUGUUAAAGCCUUAUAGGUUCGCUCCAGAAAGUAUUCUACAUUGCGACCGAAAC
...............((((....))))..((((((((((.(.-((((((.((((.(((((((((((((......))))....)).))))))))))).))).))).)))))).)))))... ( -39.10)
>DroSim_CAF1 24082 119 - 1
UAAGCUACGACUAUCGAUUAAACCAGCUAUCGGUGCAGUUGA-AGAUACAUUCUUGGGGCGACUAGGUGUUAAAGCCUUAUAGGUUCGCUCCAGAAAGUAUUCUACAUUGCGACCGAAAC
..((((..................)))).((((((((((.(.-((((((.((((.(((((((((((((......))))....)).))))))))))).))).))).)))))).)))))... ( -37.37)
>DroEre_CAF1 23031 119 - 1
UAAGCUACGACUAUCGAUUAAACCAGCUAUCGGAGCAGGUGG-AGAUACAUUCUGUGAGCGACCAGGUGUAAAGCCCUUAUAGUUGCGCUCCAGAAAGUAUUCUACAUCGCAACCGCAAU
...((........(((((..........))))).((..((((-((.(((.(((((.(((((..(((.(((((.....))))).))))))))))))).)))))))))...))....))... ( -34.00)
>DroYak_CAF1 23591 120 - 1
UAAGCUACGACUAUCGAUUAAAACAGCUAUCGGUGCAGGUGAAAGAUACAUUCUGUGGGUGACCAGGUGUUAAGCCCUUAUAGUUUCGCUCCAGAAAGUAUUCUACAUUGCAACCGACAU
..((((..................)))).(((((((((.((.(..((((.((((.(((....)))((.((.((((.......)))).)).)))))).))))..).)))))).)))))... ( -30.97)
>consensus
UAAGCUACGACUAUCGAUUAAACCAGCUAUCGGUGCAGUUGA_AGAUACAUUCUUGGGGCGACUAGGUGUUAAACCCUUAUAGGUUCGCUCCAGAAAGUAUUCUACAUUGCGACCGAAAC
.......((.....)).............(((((((((.((...(((((.((((.((((((((((((........)))....))).)))))))))).)))))...)))))).)))))... (-25.84 = -26.72 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:20 2006